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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Vifa1g09303
ATGGCGATACATTTATCCAAAACTTCTAGCCCGAACACACGCAATGGAGCCGTAAACAGTCAAGTGAAATCCAATTCACGAAATCGTTTGATTTCTGGACAGCATCATTGTGGTAAAGGGCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATTGATTTTCGACGCAATGAAAAAGACATATATGGTAGAATTGTAACTATCGAATACGACCCTAATCGAAATGCACACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACACCCCAGAGGGGCTATAATTGGAGATACCATTATTTATGGTACAAAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGACGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATAACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGTAAATCAGCAACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCAAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGCAGAGCCGGAGCTAAACGTTGGCGAGGCAAGCGTCCTGTAGTAAGAGGGGTAGTTATGAACCCTGTAGACCATCCACATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCTCAACTCCTTGGGGGTATCCTGCACTTGGAAGAAGAACTAGAAAAAGGAAGAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTCAATAG
903
0.433
MAIHLSKTSSPNTRNGAVNSQVKSNSRNRLISGQHHCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAHICLIHYGDGEKRYILHPRGAIIGDTIIYGTKVPIKMGNALPLSAPYALEEACTVWEGVLIDQKDESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGAKRWRGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPSTPWGYPALGRRTRKRKKYSDNLILRRRSQ
300
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Vifa1g09303
300
ProSitePatterns
Ribosomal protein L2 signature.
242
253
IPR022671
GO:0003735|GO:0005840|GO:0006412
Vifa1g09303
300
SMART
Ribosomal_L2_C_2
122
277
IPR022669
GO:0003735|GO:0005840|GO:0006412
Vifa1g09303
300
Gene3D
Ribosomal protein L2, domain 3
221
299
IPR014726
-
Vifa1g09303
300
FunFam
50S ribosomal protein L2, chloroplastic
145
220
-
-
Vifa1g09303
300
Pfam
Ribosomal Proteins L2, C-terminal domain
158
275
IPR022669
GO:0003735|GO:0005840|GO:0006412
Vifa1g09303
300
Hamap
50S ribosomal protein L2 [rplB].
1
299
IPR005880
GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Vifa1g09303
300
NCBIfam
50S ribosomal protein L2
157
299
IPR005880
GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Vifa1g09303
300
Pfam
Ribosomal Proteins L2, RNA binding domain
40
115
IPR022666
GO:0003735|GO:0005840|GO:0006412
Vifa1g09303
300
PANTHER
RIBOSOMAL PROTEIN L2
29
299
IPR002171
GO:0003735|GO:0005840|GO:0006412
Vifa1g09303
300
PIRSF
RPL2p_RPL2a_RPL8e_RPL2o
14
133
IPR002171
GO:0003735|GO:0005840|GO:0006412
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Vifa1g09303
Vifa-Chr1
1473221956
1473223485
Dispersed/Wgd
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Vifa1g09303
51
259
Cytoplasmic Ribosomal Protein Gene Family
AT3G51190
32.579
5.68e-24
96.7
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Vifa1g09303
K02886
-
cave:30215254
512.686
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