Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09302 ATGAAACCTTATCAGTTTTCATCATCACATGATAATCTTTTAACCATGTCTTCTTCTTCATGGCTAACTTCTCCTTCATGCATCCTTTTTCCTATAGATTCATCTTCCTCTACACCCAACCTCGTGCTTCAATGGTTAACCTTTCTTTTTCTATCTCCATGTCCTCAAAGACTTGCTCTTTCTGCTCTTGATTTCTTGTTTCTGCTCTCCCTCTTAGCTTTTGCAGCTCACAAACTCTACTCAAGATTCAACTCAACTTCCAACTCTACCTCCTCAATCACAAAACCACTTCTGCAGGAGAAAGATTCTGACTATAGAATCACCTTTTGGTTCAAACTACCTTTGTTGGTAACTATCCTTTTGGCTATAGCTTACACTGTTCTAGGAGTCTTGGCCTTTACGCAAACAAACTTTGCTTCATGGAAACTAATCGAAGCACTTTTTCGGTTGTTTCAAGCAATAACCAACATAGTGATAGTGATTTTAATGATACATGAGAAAAAATTCAAATCTTCCAAACACCCTTTATCATTAAGAATCTATTGGATAGTAAACTTTGTGATTGCTACTTTATTTGCTATTTCAGCTATTGTTCGAATAGTAACTGTTGGTGAATCAAAGTTGGAACTTAGTTTGAGAATAGATGACATATTCTCATTGATTAATCTTCCATTATCTGTGTTCTTTTTTGTGATAGCTATAAAAGGGTCATCAGGGATTCATGTGATAAGAATATCTGATGTAGTAGTAGCAACATATCGGTCGATTTCAACAGATAGAACTTTGAGTCCTTATGCTTGTTCATCATTTTTGTCCAAAACCGTGTGGTATTGGATGAATCCTTTGATCAATAAAGGTTACGAAACACCGCTTAAACTTGAAGATGTACCTTCACTTCCTCTTGAATTTAGAGCAGAAAAAATGTCTGAACTTTTTCAAAATAATTGGCCAAAGCCAGAGGAAAACAGTAAGCATCCAGTTGGAGTGACCTTATTTAGGTGTTTTTGGAAACACATAGCTTTCACTGGCTTCCTTGCAATCATTAGGCTTTGTGTTATGTATGTTGGTCCAATGCTGATTCAGAGTTTTGTTGATTTCACATCAAGAAAAGATAGTACTACTAGTGAAGGCATTGTTTTGATATTGATCCTTTTTGTAGCAAAATCAGTTGAAGTACTTAGTGTTCATCAATTCAACTTCCACTCTCAGAAACTTGGTATGCTTATTCGTTCGAGCATAATCACTTCGGTTTACAAAAAGGGTTTAAGGTTGTCAAGCTCTTCAAGACAAGCTCATGGAACTGGCCAGATTGTGAACCACATGGCTGTTGATGCTCAACAGCTCTCAGATTTGATGATGCAGTTTCATCCTATTTGGTTGATGCCACTACAAGTTGCAGCTGCGTTAATTCTTATGTATAGCTATGTTGGTATATCAGTACTTGCAGCATTGCTTGGAACCACCATTGTGTTTCTATTCACGCTATATCGGACGAAGAGTAGCAACAGCTTCCAGTTTCGGATAATGACCAGCCGCGACTCGAGGATGAAGGCGACAAACGAGTTGCTTAACAACATGCGAGTGATAAAGTTTCAAGCGTGGGAAGAGTACTTTGGTAACAAAATTCGACAGTTTCGTGAAGCCGAGCATGGATGGATTGGGAAGTTCTTGTACTATTTCGCTGTTAACATGGGAGTTTTGTCCACTGCTCCACTAACTGTAACTGTTCTTACCTTTGGAACTGCGACTTTTCTTGGAATTCCTTTGAATGCTGGTACAGTTTTCACAATAACTTCGGTAATTAAGATACTTCAGGAGCCTGTGAGAACTTTTCCTCAGGCTCTTATCATGATTTCACAGGCAACAATCTCTTTAGGGAGGTTGGATGAGTTTATGGTGAGTAAAGAAACGGATGAGAATGCAGTGCAAAGAGAGGAGGATTGTGATGGTGATGTGGCTGTGGAGATAAAAGATGGGAAATTCTCATGGGATGATAAGGATGAGAATGAGACTTTGAAAGTTGACGAGTTGGTGATCAAGAAAGGGAATCATGCTGCTGTTGTAGGAACTGTTGGATCAGGCAAGTCTTCATTACTGGCTTCTGTGTTGGGAGAGATGTTCAAGATCTCAGGAAAGGTAAGAGTTTGTGGAACAACAGCGTATGTAGCACAGACATCATGGATTCAGAATGCAACCATCAAAGAAAACATATTGTTTGGTTTACCAATGAACATGGACAAGTACATGGAAGCTTTAAGAGTATGCTGTCTTGAGAAGGATCTTGAAGTGATGGATGATGGTGACGAGACTGAGATTGGAGAGCGTGGAATAAACCTCAGCGGCGGTCAGAAACAACGCATACAGCTTGCTAGAGCTGTATATCAGAACACTGACATCTATCTCCTTGATGATGTATTCAGTGCTGTTGATGCTCAAACAGGATCTTTTATTTTTAAGGAATGTATTATGGGAACTCTCAAAGATAAGACAGTTTTACTTGTAACCCACCAAGTTGATTTCTTGCATAATGTTGACTCTATAATGGTAATGCGTGAAGGGAGAGTAGTGCAAAGTGGAAAGTATGATGAACTTCTCAAAGCAGGCCTAGATTTTGGTGCACTTGTGGCAGCTCATGAATCCTCTATGGAGATAGCAGAAACAAGTGATAATTCCAATGAGGAATCTTCTCAGTCTCCAAAACTCGCCCGCATCGCTTCAAAAGAAAAAGAAAACGCGGGCGAACATCAGTCTTCTCAAGATAAATCTAAGTCTGATAAGACAGCTGCAAAGCTCATTGAAGATGAGGAAAGAGAGACAGGACGTGTAAACCTTAAAGTATACAAACATTATTTCACAGAAGCATTTGGATGGTGGGGAATAGCACTTATGGTGGCAATGTCAGTGGCTTGGATGTTGTCATTTTTGGCTGGTGATTACTGGCTAGCAATTGCAACTTCAGAAGACTCTAGCATTCCTTCTTTCACTTTCATTATCGTCTATGCTGTTATAGCTGTTGTTGCATGCATAGTGGTTATGGTAAGAGCTTTCTTGTTTACATATTGGGGTCTAAAGACATCTCAAAGCTTCTTCATTGGAATGCTTCAAAGTATCCTTCATGCACCAATGTCATTCTTTGACACTACTCCTTCTGGCAGAATTTTGAGTCGTGTATCTACTGATCTACTTTGGGTGGATATATCAATTCCAATGTTGGTAAACTTTGTAATGATTGCATACTTATCATTATTCAGTATCCTCATTGTGACATGCCAGAATTCTTGGGAGACTGTCTTCCTCTTAATTCCACTGTTTTGGTTCAACAACTGGTATAGGAAATATTATCTTGCAACTTCTAGGGAATTGACTCGTCTTGATTCAATCACAAAAGCTCCAGTGATTCATCACTTTTCAGAGACACTTTCCGGTGTTATGACAATCCGTAGCTTAAGAAAGCAGAATGAATTTTGTGATGAAAATATTGACAGGGTGAATGCAAGTCTAAGAATGGATTTCCATAACAACGGAGCAAATGAATGGCTTGGTTTTCGCTTGGACTATATGGGAGTGGTTTTCCTTTGCATTGCCACCCTTTTTATGATCTTTTTGCCAAGTGCTATTGTTAAGCCAGAATATGTTGGTATGTCTTTATCCTATGGCTTGGCTCTGAGCGGTCTCTTGTCATTTACCATAACAATGACTTGCTCGGTTGAGAACAAAATGGTTTCAGTTGAGAGGATAAAGCAGTTCACTAACCTCCCACCAGAAGCTCCATGGAAAATAGTTGATAAGTCTCCACCTCAGAATTGGCCTAGTCATGGAACTATAGAGTTAAACAATTTACAGGTTAGGTACAGGCCAAATACTCCTCTAGTTCTTAAGGGAGTCTCTCTAACCATTCAAGGTGGAGAAAAAGTTGGCGTTGTTGGGCGTACAGGAAGTGGAAAATCAACACTCATCCAAGTTTTATTCAGGTTGATTGAGCCTTCCGCCGGGAATATAATCATTGATGGTATCAATATTTCGACTGTTGGCCTTCATGATTTGAGGTCATGTTTTGGAATTATTCCACAAGATCCTGTCCTCTTTCAAGGAACAATTAGAACCAATATTGACCCTCTTGGATTGTATTCAGAAGATGAAATTTGGAAGAGTCTTGAGCGGTGCCAATTGAAAGAAGTGGTGGCTGCAAAGCCCGAGAAACTTGAGGCTTTAGTGGTTGATGGTGGAGACAATTGGAGTGTTGGGCAAAGGCAGCTTCTATGTTTGGGAAGGATAATGCTAAAACGCAGCAAAATACTATTCATGGATGAAGCAACAGCATCAGTTGATTCACAAACAGATGCTGTAATACAAAAGATCATCAGAGAGGATTTTGCAGATCGTACAATAATTAGCATTGCTCACAGAATATCAACAGTTATGGACTGTGACAAGGTTTTGGTCATAGACGCGGGTTTGGCAAAGGAATACGAAAAACCATCACGTTTACTTGAAAGGGCATCACTTTTTGCTGTATTGGTTAAAGAGTATTCTAATAGATCAATTTAA 4548 0.3927 MKPYQFSSSHDNLLTMSSSSWLTSPSCILFPIDSSSSTPNLVLQWLTFLFLSPCPQRLALSALDFLFLLSLLAFAAHKLYSRFNSTSNSTSSITKPLLQEKDSDYRITFWFKLPLLVTILLAIAYTVLGVLAFTQTNFASWKLIEALFRLFQAITNIVIVILMIHEKKFKSSKHPLSLRIYWIVNFVIATLFAISAIVRIVTVGESKLELSLRIDDIFSLINLPLSVFFFVIAIKGSSGIHVIRISDVVVATYRSISTDRTLSPYACSSFLSKTVWYWMNPLINKGYETPLKLEDVPSLPLEFRAEKMSELFQNNWPKPEENSKHPVGVTLFRCFWKHIAFTGFLAIIRLCVMYVGPMLIQSFVDFTSRKDSTTSEGIVLILILFVAKSVEVLSVHQFNFHSQKLGMLIRSSIITSVYKKGLRLSSSSRQAHGTGQIVNHMAVDAQQLSDLMMQFHPIWLMPLQVAAALILMYSYVGISVLAALLGTTIVFLFTLYRTKSSNSFQFRIMTSRDSRMKATNELLNNMRVIKFQAWEEYFGNKIRQFREAEHGWIGKFLYYFAVNMGVLSTAPLTVTVLTFGTATFLGIPLNAGTVFTITSVIKILQEPVRTFPQALIMISQATISLGRLDEFMVSKETDENAVQREEDCDGDVAVEIKDGKFSWDDKDENETLKVDELVIKKGNHAAVVGTVGSGKSSLLASVLGEMFKISGKVRVCGTTAYVAQTSWIQNATIKENILFGLPMNMDKYMEALRVCCLEKDLEVMDDGDETEIGERGINLSGGQKQRIQLARAVYQNTDIYLLDDVFSAVDAQTGSFIFKECIMGTLKDKTVLLVTHQVDFLHNVDSIMVMREGRVVQSGKYDELLKAGLDFGALVAAHESSMEIAETSDNSNEESSQSPKLARIASKEKENAGEHQSSQDKSKSDKTAAKLIEDEERETGRVNLKVYKHYFTEAFGWWGIALMVAMSVAWMLSFLAGDYWLAIATSEDSSIPSFTFIIVYAVIAVVACIVVMVRAFLFTYWGLKTSQSFFIGMLQSILHAPMSFFDTTPSGRILSRVSTDLLWVDISIPMLVNFVMIAYLSLFSILIVTCQNSWETVFLLIPLFWFNNWYRKYYLATSRELTRLDSITKAPVIHHFSETLSGVMTIRSLRKQNEFCDENIDRVNASLRMDFHNNGANEWLGFRLDYMGVVFLCIATLFMIFLPSAIVKPEYVGMSLSYGLALSGLLSFTITMTCSVENKMVSVERIKQFTNLPPEAPWKIVDKSPPQNWPSHGTIELNNLQVRYRPNTPLVLKGVSLTIQGGEKVGVVGRTGSGKSTLIQVLFRLIEPSAGNIIIDGINISTVGLHDLRSCFGIIPQDPVLFQGTIRTNIDPLGLYSEDEIWKSLERCQLKEVVAAKPEKLEALVVDGGDNWSVGQRQLLCLGRIMLKRSKILFMDEATASVDSQTDAVIQKIIREDFADRTIISIAHRISTVMDCDKVLVIDAGLAKEYEKPSRLLERASLFAVLVKEYSNRSI 1515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09302 1515 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 267 1510 - -
Vifa1g09302 1515 Gene3D - 649 880 IPR027417 -
Vifa1g09302 1515 MobiDBLite consensus disorder prediction 903 928 - -
Vifa1g09302 1515 Pfam ABC transporter transmembrane region 980 1202 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g09302 1515 Pfam ABC transporter transmembrane region 341 608 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g09302 1515 CDD ABCC_MRP_domain2 1273 1493 - -
Vifa1g09302 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 652 873 IPR027417 -
Vifa1g09302 1515 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 654 877 IPR003439 GO:0005524
Vifa1g09302 1515 FunFam ABC transporter C family member 10 323 636 - -
Vifa1g09302 1515 SUPERFAMILY ABC transporter transmembrane region 331 634 IPR036640 GO:0005524|GO:0016020
Vifa1g09302 1515 SUPERFAMILY ABC transporter transmembrane region 957 1255 IPR036640 GO:0005524|GO:0016020
Vifa1g09302 1515 SMART AAA_5 681 862 IPR003593 GO:0016887
Vifa1g09302 1515 SMART AAA_5 1301 1486 IPR003593 GO:0016887
Vifa1g09302 1515 MobiDBLite consensus disorder prediction 884 928 - -
Vifa1g09302 1515 FunFam ABC transporter C family member 3 1258 1509 - -
Vifa1g09302 1515 FunFam ABC transporter C family member 5 923 1256 - -
Vifa1g09302 1515 CDD ABC_6TM_ABCC_D1 341 628 IPR044746 GO:0140359
Vifa1g09302 1515 Pfam ABC transporter 676 805 IPR003439 GO:0005524
Vifa1g09302 1515 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1275 1509 IPR003439 GO:0005524
Vifa1g09302 1515 Pfam ABC transporter 1292 1440 IPR003439 GO:0005524
Vifa1g09302 1515 CDD ABCC_MRP_domain1 654 854 - -
Vifa1g09302 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1264 1508 IPR027417 -
Vifa1g09302 1515 MobiDBLite consensus disorder prediction 884 902 - -
Vifa1g09302 1515 Gene3D ABC transporter type 1, transmembrane domain 922 1256 IPR036640 GO:0005524|GO:0016020
Vifa1g09302 1515 Gene3D ABC transporter type 1, transmembrane domain 329 637 IPR036640 GO:0005524|GO:0016020
Vifa1g09302 1515 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 957 1238 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g09302 1515 ProSitePatterns ABC transporters family signature. 779 793 IPR017871 GO:0005524|GO:0016887
Vifa1g09302 1515 CDD ABC_6TM_ABCC_D2 956 1250 IPR044726 GO:0140359
Vifa1g09302 1515 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 340 620 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g09302 1515 Gene3D - 1259 1508 IPR027417 -
Vifa1g09302 1515 FunFam ABC transporter C family member 5 639 886 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09302 Vifa-Chr1 1472998495 1473004201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09302 654 906 Calmodulin-binding Proteins AT2G36910 31.522 3.60e-28 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09302 - K05665 gmx:100780167 2463.72