Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09297 ATGTGGATCTGTTCGCTGCAAGTTGAGCCCTTCGACAATCTAGAAAATCTATCAGAGATAAACATGCTTAGTCCTGAAGGTGAACTGAAAATAAGCTTCGGCTATCAATGCAATGACGACAGAGGTATCCCTTGCAAGGTTGCCAAAGGCTGCAAAATCCTTCCTGAAATGCGAAGAACAAGCAGTTTCTCTTGTTTGTCTGGTGCTGCTTTGAGTGCAAATGCTACACTTGCCAACACAAACATCTGCAATGGTGTGATAGGAGAAGAAATCCTTCCGAATTTGGACTCTCCTAATTCATTTCGGCGGGTTCCCTCTTCGCCATGTCTTGGAATGTTGGACATGCTATCATCTTCTTTCCAAAGTAGTTTGTCAAACCTAAGTTGCAGCCCATCCAGTCCAAGTCTTATGCTTGAATACGACCCTTGTTCGTTAAGACTCATGAGTCCTTCCTCTAGAAATGAAAGTTTTCTCAATGCAACAGAAGTACAAGTAGCAGGAGGAGCTGCTGGTGAAGATAGAGTTCAAGCAGTTTGTTCTGAAGAAAATGGTTGGCTATTTTGTGCAATTTATGACGGATTTAATGGGAGAGATGCGGCGGATTATCTTGCTTGTACTCTTTATGACTCTATTGTATCTTATCTAAATACAATAGATTGGAATTCAGAACCGAATTCCATCAACGCTTCTGACAATGTCGGTTTGGATGATAGTTGTATTCTTGATCACGGGCATCAATCTTCATCAGATAAATCATTTTCGAATGTGGTACTTGATAGCCTCAAACATGTTCTTAATCAGAGCAGTGCTTGCAACGTGCAGTACAGTGAAAGAGCTCGACTTCTTGCTGAGCATCCCGATGATCCTAAGACCATTGTAGCAGGGAGAGTGAAAGGAAAGTTGAAGGTTACACGTGCTTTTGGAGTTGGGTACTTGAAAAAGAAAATTCTGAATGATGCATTAATGGGAATCCTCCGAGTTCAAGATCTTAGAAGCCCGCCATACGTTTCAACGGATCCATCATTGAATGTGCATAAAATCTCTCCTTCTGATCAATTTGTTATAGTTGCAAGTGATGGTTTATTTGACTTCTTCAGCAATGAGGAAGCAGTAAATCTTGTCGAGTCTTACATCTTGCGCAATCCTCACTGCGATCCAGCCAAATATCTCATTGAAAAACTAGTAACAAAAGCAGCTGATTCTGCAGGTTTCAGCACGGAGGAGTTGATGAATGTTCCGGCTGGAAGTAGGAGGAAATATCACGATGACGTCACTGTAATGGTGATCATCCTTGGGATGAATAAACGGACTTCAAAGGCGTCAATTTGCATCTAA 1335 0.4165 MWICSLQVEPFDNLENLSEINMLSPEGELKISFGYQCNDDRGIPCKVAKGCKILPEMRRTSSFSCLSGAALSANATLANTNICNGVIGEEILPNLDSPNSFRRVPSSPCLGMLDMLSSSFQSSLSNLSCSPSSPSLMLEYDPCSLRLMSPSSRNESFLNATEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADYLACTLYDSIVSYLNTIDWNSEPNSINASDNVGLDDSCILDHGHQSSSDKSFSNVVLDSLKHVLNQSSACNVQYSERARLLAEHPDDPKTIVAGRVKGKLKVTRAFGVGYLKKKILNDALMGILRVQDLRSPPYVSTDPSLNVHKISPSDQFVIVASDGLFDFFSNEEAVNLVESYILRNPHCDPAKYLIEKLVTKAADSAGFSTEELMNVPAGSRRKYHDDVTVMVIILGMNKRTSKASICI 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09297 444 CDD PP2Cc 170 431 IPR001932 -
Vifa1g09297 444 ProSiteProfiles PPM-type phosphatase domain profile. 157 431 IPR001932 -
Vifa1g09297 444 PANTHER PROTEIN PHOSPHATASE 2C 161 429 IPR015655 GO:0004722|GO:0006470
Vifa1g09297 444 SMART PP2C_4 148 429 IPR001932 -
Vifa1g09297 444 Pfam Protein phosphatase 2C 276 398 IPR001932 -
Vifa1g09297 444 SUPERFAMILY PP2C-like 169 432 IPR036457 -
Vifa1g09297 444 Gene3D - 273 440 IPR036457 -
Vifa1g09297 444 Gene3D - 130 272 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09297 Vifa-Chr1 1472199566 1472204238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09297 277 444 PP2C-type Phosphatase Gene Family AT3G16560 70.238 4.00e-80 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09297 - - sspl:121807757 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09297 1 1472199566 1472204238 Vifa1g09297 1 1472199566 1472204238 ECH
Vifa4g03952 4 1265238374 1265240102 Vifa1g09297 1 1472199566 1472204238 PCT