Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09283 ATGGAAGATCACATCCACAACAACACTAGAACAATAAACACCAATTCTACCACGTGCTTAAAACTCTTTGGTTTCAGTGTCCACGAAGAAAACGACGACCCATCACCACTACCACTATTTGAAGAAGCTACCGGAAACACTTCACCTTCTGGATCCAGTGAATCCGTCAGCGGAGACGGTGGTGCTTCAAGTTTAAACCCTTCCTCCGGCGACCGTAAATACGAGTGTCAGTATTGCTGTCGAGAATTCGCAAACTCGCAAGCACTTGGCGGACACCAAAACGCGCACAAAAAAGAGCGCCAACAGCTCAAACGCGCACAGTTACAAGCTTCACGAAACGCTGCCGTTTCGTTTGTTCGAAATCCGATAATCTCCGCCTTTGCACCGCCTCCACATCTGCTTGCTTCGCCGGGACAAGTTATGATGCCGACTGTTCCTCCGTCGTGGGTCTACATGCCGCCACGTACAGCGCCTCCTCCTTTCCACGTATCAGTTTCACACGGTTGCACTTTCCCGTCGGTGAACAACAGCAACTGTAACGCTGGTGGAGGTGGTAACAGTTATAGCTTTATGACAAGTGCAAGATCCGCAGGTGCAGGTTTATTACCGTGTGTTAGCGGAGTAGGGGATTCTTCAGCCACATTGTCAACTATGGGCTCACAAGCACAGAGCATGGCCCAGTTTGGGAAACTTGATGGGCCATCTTTGAGTAGGTTCTCAAAAGGAGATGTGGGGCCCAACTTTGAGGATGGGTTCGGTTTGGATTTGCATCTTAGTCTATCCCCGCCTTGA 792 0.4987 MEDHIHNNTRTINTNSTTCLKLFGFSVHEENDDPSPLPLFEEATGNTSPSGSSESVSGDGGASSLNPSSGDRKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQASRNAAVSFVRNPIISAFAPPPHLLASPGQVMMPTVPPSWVYMPPRTAPPPFHVSVSHGCTFPSVNNSNCNAGGGGNSYSFMTSARSAGAGLLPCVSGVGDSSATLSTMGSQAQSMAQFGKLDGPSLSRFSKGDVGPNFEDGFGLDLHLSLSPP 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09283 263 Gene3D Classic Zinc Finger 52 121 - -
Vifa1g09283 263 MobiDBLite consensus disorder prediction 31 68 - -
Vifa1g09283 263 FunFam Zinc finger protein GIS3 62 124 - -
Vifa1g09283 263 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Vifa1g09283 263 PANTHER ZINC FINGER PROTEIN 5 5 262 IPR044299 GO:0010090
Vifa1g09283 263 SUPERFAMILY beta-beta-alpha zinc fingers 70 101 IPR036236 -
Vifa1g09283 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 101 IPR013087 -
Vifa1g09283 263 MobiDBLite consensus disorder prediction 41 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09283 Vifa-Chr1 1469043601 1469044392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09283 16 262 C2H2 Transcription Factor Family AT1G68360 44.569 1.11e-51 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09283 - - tpra:123911684 430.639