Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09279 ATGATGGGTACAGTATCGTGCTTCTTCGTGTTTTTGCCACACGACAAATCCTGGAAAACTCCAATGTTGAAAATGAAAACCCTAAATCCAATCCCAAATTTCAATTTTTGTCTCTCTTTGAAATGCCACTATTCAACTTCACAACAAAACCAATTCACAATTTCATATCTCGTTACCAATTTGGGCTTCTCATTAGAAACCGCTACAAGAGCTTCCAAAAGCGTTCGTTTCAAGACTTCCGAAAAGCCTGATACAGTAATCGCCACCTTCAGAAACTTCGGTTTCTCCGATTCTCAGATAAGCTACGTCGTTAGTAAAGCGCCCGACATTCTTACATGTAACCCCTACAAAAGGATTTTGCCAAAGTTTGAATTTTTATTCTCAAAAGGTGCTTCAAATTCTGATGTAGTGGAGATTGTGGTCAGAAGCCCTAGAATTCTATATGCAAGTCTTGACAATCGCATAATCCCTACTTTTGAATGGGTAAGAAGGTTCTTTCCATCTGATGATGAAGTTATTCAATACCTACTTAAATATAGATGTTTCTATGGTTATGATAGTGTTGCTAATAATGTCAAGTTGTTGCTTGATCATGGAGTCACTGAGTCAAATATAAGACATTTGTTACTTAGAAGTCCCTCTATATTATCTTGTTATGACCTAAGGAAGCCTATGAATAGGGTTAAGGAAATGGGATCTAATGATCCTTCCAATGTAAATGTTTCTAAAGCATTGTTAGGCATAAGGTCCATGACGAAATCCCAAGTTTTTGTCTATAAGAAATGGGGTTGGTCTGATGAAATGGTTCTTGAAGCTTTTAGGAAGCGACCCGTGTCTATGCTATCATCCGAAGATAAAATTAACAAGGTCATGACATTTTGGGTGAATGAGTTGGGTTGGAACTCTTCGGCTCTTGTCAAAAGGGTCGAAATTTTTTCTTATAGTTTGGAAAATAGGATCATTCCCAGGGGTTGTGTTATTTCATATCTCATCTCCAAAGGTTTGATAGAAAAGAATGTTGAATTGTCTACCCCATTTGCTGTTAGTGAAAAGATGTTTCTTGAAATGTATGTGCAACGTTTTAAAGAGGAAAGACATAATTTGTTAAAGCTATACCAGGAGAAAATGGATGGTGGTAAGAAAATCGAAGAAAGTGGTGAAGTGTCTGTAAGCTATTGA 1179 0.3698 MMGTVSCFFVFLPHDKSWKTPMLKMKTLNPIPNFNFCLSLKCHYSTSQQNQFTISYLVTNLGFSLETATRASKSVRFKTSEKPDTVIATFRNFGFSDSQISYVVSKAPDILTCNPYKRILPKFEFLFSKGASNSDVVEIVVRSPRILYASLDNRIIPTFEWVRRFFPSDDEVIQYLLKYRCFYGYDSVANNVKLLLDHGVTESNIRHLLLRSPSILSCYDLRKPMNRVKEMGSNDPSNVNVSKALLGIRSMTKSQVFVYKKWGWSDEMVLEAFRKRPVSMLSSEDKINKVMTFWVNELGWNSSALVKRVEIFSYSLENRIIPRGCVISYLISKGLIEKNVELSTPFAVSEKMFLEMYVQRFKEERHNLLKLYQEKMDGGKKIEESGEVSVSY 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09279 392 Gene3D Transcription termination factor 3, mitochondrial 166 371 IPR038538 -
Vifa1g09279 392 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Vifa1g09279 392 SMART mt_12 137 167 IPR003690 GO:0003690|GO:0006355
Vifa1g09279 392 SMART mt_12 173 201 IPR003690 GO:0003690|GO:0006355
Vifa1g09279 392 SMART mt_12 302 336 IPR003690 GO:0003690|GO:0006355
Vifa1g09279 392 SMART mt_12 101 132 IPR003690 GO:0003690|GO:0006355
Vifa1g09279 392 FunFam Mitochondrial transcription termination factor-like 151 365 - -
Vifa1g09279 392 PANTHER CGI-12 PROTEIN-RELATED 49 362 IPR003690 GO:0003690|GO:0006355
Vifa1g09279 392 Pfam mTERF 89 289 IPR003690 GO:0003690|GO:0006355
Vifa1g09279 392 Pfam mTERF 254 353 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09279 Vifa-Chr1 1468216720 1468217898 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa1g09279 mTERF 8.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09279 K15032 - gmx:102666739 352.829