Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09278 ATGATGGGTACAGTATCGTGCTTCTTCGTGTTTTTGCCACACGACAAATCCTGGAAAACTCCAATGTTGAAAATGAAAACCCTAAATCCAATCCCAAATTTCAATTTTTGTCTCTCTTTGAAATGCCACTATTCAACTTCACAACAAAACCAATTCACAATTTCATATCTCGTTACCAATTTGGGCTTCTCATTAGAAACCGCTACAAGAGCTTCCAAAAGCGTTCGTTTCAAGACTTCCGAAAAGCCTGATACAGTAATCGCCACCTTCAGAAACTTCGGTTTCTCCGATTCTCAGATAAGCTACGTCGTTAGTAAAGCGCCCGACATTCTTACATGTAACCCCTACAAAAGGATTTTGCCAAAGTTTGAATTTTTATTCTCAAAAGGTGCTTCAAATTCTGATGTAGTGGAGATTGTGGTCAGAAGCCCTAGAATTCTATATGCAAGTCTTGACAATCGCATAATCCCTACTTTTGAATGGGTAAGAAGGTTCTTTCCATCTGATGATGAAGTTATTCAATACCTACTTAAATATAGATGTTTCTATGGTTATGATAGTGTTGCTAATAATGTCAAGTTGTTGCTTGATCATGGAGTCACTGAGTCAAATATAAGACATTTGTTACTTAGAAGTCCCTCTATATTATCTTGTTATGACCTAAGGAAGCCTATGAATAGGGTTAAGGAAATGGGATCTAATGATCCTTCCAATGTAAATGTTTCTAAAGCATTGTTAGGCATAAGGTCCATGACGAAATCCCAAGTTTTTCTCTATAAGAAATGGGGTTGGTCTGATGAAATGGTTCTTGAAGCATTTAGGAAGCGACCCGTGTCTATGCTATCATCCGAAGATAAAATTAACAAGGTCATGAGTTTTTGGGTGCATGAGTTGGGTTGGAACTCTTCGGCTCTTGTCAAAAGGGTGGAAATTTTTTCGTATAGTTTGGAAAATAGGATCATTCCCAGGGGTTGTGTTATTTCATATCTGATCTCCAAAGGTTTGATAGAAAAGAATGTTGAATTGTCTACCCCATTTGCTGTTAGTGAAAAGATGTTTCTTGAAATGTATGTGCAACGTTTTAAAGAGGAAAGACATAATTTGTTAAAGCTATACCAGGAGAAAATGGATGGTAAGAAAATCAAAGAAAATGCTGAAGTGTCTGTAAGCTATTGA 1176 0.369 MMGTVSCFFVFLPHDKSWKTPMLKMKTLNPIPNFNFCLSLKCHYSTSQQNQFTISYLVTNLGFSLETATRASKSVRFKTSEKPDTVIATFRNFGFSDSQISYVVSKAPDILTCNPYKRILPKFEFLFSKGASNSDVVEIVVRSPRILYASLDNRIIPTFEWVRRFFPSDDEVIQYLLKYRCFYGYDSVANNVKLLLDHGVTESNIRHLLLRSPSILSCYDLRKPMNRVKEMGSNDPSNVNVSKALLGIRSMTKSQVFLYKKWGWSDEMVLEAFRKRPVSMLSSEDKINKVMSFWVHELGWNSSALVKRVEIFSYSLENRIIPRGCVISYLISKGLIEKNVELSTPFAVSEKMFLEMYVQRFKEERHNLLKLYQEKMDGKKIKENAEVSVSY 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09278 391 Pfam mTERF 89 289 IPR003690 GO:0003690|GO:0006355
Vifa1g09278 391 Pfam mTERF 256 353 IPR003690 GO:0003690|GO:0006355
Vifa1g09278 391 FunFam Mitochondrial transcription termination factor-like 151 365 - -
Vifa1g09278 391 PANTHER CGI-12 PROTEIN-RELATED 49 362 IPR003690 GO:0003690|GO:0006355
Vifa1g09278 391 SMART mt_12 137 167 IPR003690 GO:0003690|GO:0006355
Vifa1g09278 391 SMART mt_12 173 201 IPR003690 GO:0003690|GO:0006355
Vifa1g09278 391 SMART mt_12 302 336 IPR003690 GO:0003690|GO:0006355
Vifa1g09278 391 SMART mt_12 101 132 IPR003690 GO:0003690|GO:0006355
Vifa1g09278 391 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Vifa1g09278 391 Gene3D Transcription termination factor 3, mitochondrial 167 372 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09278 Vifa-Chr1 1468200542 1468201717 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa1g09278 mTERF 2.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09278 K15032 - gmx:102666739 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03942 4 1260873012 1260874172 Vifa1g09278 1 1468200542 1468201717 PCT