Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09277 ATGATGGTTACAAGTTGTGTTAATGTATTGCAATCTTTCTTCAATTTTCCAATGTTGGAAATGAAAACCCTAAATCCAATCCCAAATTTCAATTCTACTCTCTCTTTGAAATGTCACTGTTCAACTACTTCACCAAACGAATTCACAGTTTCATATCTCGTTACCAATTTGGGCTTCTCATTCGAAACTGCTACAAGAGCTTCCAAACTCGTTCGTTTCAAGGCTTCCCAAAACCCTGATTCAGTAATCGCCATCCTCACAGACTTTGGTTTCTCCGATTCTCAGATAAACAACCTTGTTAGACAAGCACCCAACATTCTTACATGTGACCCCCACAAAAGAATTTTGCCAAAGTTTCAATTTTTACTCTCAAAAGGTGCTTCAAATTCTGATGTAGTGGAGATTGTGTGCAGAAGCCCTAGAATTCTATATGCAAGTCTTGACAATTGCATAATCCCTACTTTTGAATTGGTAAGAAGGTTCCTTCCATCTAATCAGAAAGTTTTTCAATCTAGATGTTTCTTTGGTTATCATAATTTTGTTAGTAATGTGAAGTTGTTGCTTGATCATGGAGTCACTGACTCAAATATAAGATATCTGTTACTTAAAACACCCTCTATATTTCTGATTCGGGACATGAGGAGTGCTCTGGATATGGTTAAGAATATGGGATTTAATGATCCTTCCAAAGTAAATTTTTGTATAGCATTGTTAGTCAAAAGGGCTATGCCGAAATCTAAGTGGGATGCTAAAGTTATTGTCTTTAAGACATGGGGTTGGTCCGATGAAATGGTTCTAGAAGCGTTTAGGAAGCGACCCTTGTTTATGCTAACATCCGCAGAGAAAATTGATAATATCATGAGATTTTGGGTGAATGAGTTGGGCTGGAACTCTTCAGCCCTTGTCAAAAGGGCGGATATTTTTTCGTATAGTTTGGAGAATAGGATCATTCCGAGGGCCTGTGTTGTTTCGTATCTGATCTCCCAAGGTTTGATAAAAAATAATGTGGAATTGTCTACCCCTTTTGGTGTTAAGGAAGAGGTGTTTCTTGAAAAGTATGTGCAAAGTTTTAAAGAAGAAAGACATAATTTGTTAAAGCTATACCAGGAAAAAATGGATGGTAAGAAAATCAAGGAAAATGGTGAAGCGTCTGTAAGCTATTGA 1164 0.3694 MMVTSCVNVLQSFFNFPMLEMKTLNPIPNFNSTLSLKCHCSTTSPNEFTVSYLVTNLGFSFETATRASKLVRFKASQNPDSVIAILTDFGFSDSQINNLVRQAPNILTCDPHKRILPKFQFLLSKGASNSDVVEIVCRSPRILYASLDNCIIPTFELVRRFLPSNQKVFQSRCFFGYHNFVSNVKLLLDHGVTDSNIRYLLLKTPSIFLIRDMRSALDMVKNMGFNDPSKVNFCIALLVKRAMPKSKWDAKVIVFKTWGWSDEMVLEAFRKRPLFMLTSAEKIDNIMRFWVNELGWNSSALVKRADIFSYSLENRIIPRACVVSYLISQGLIKNNVELSTPFGVKEEVFLEKYVQSFKEERHNLLKLYQEKMDGKKIKENGEASVSY 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09277 387 Pfam mTERF 84 283 IPR003690 GO:0003690|GO:0006355
Vifa1g09277 387 Pfam mTERF 179 349 IPR003690 GO:0003690|GO:0006355
Vifa1g09277 387 Gene3D Transcription termination factor 3, mitochondrial 160 367 IPR038538 -
Vifa1g09277 387 SMART mt_12 298 332 IPR003690 GO:0003690|GO:0006355
Vifa1g09277 387 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Vifa1g09277 387 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
Vifa1g09277 387 SMART mt_12 198 226 IPR003690 GO:0003690|GO:0006355
Vifa1g09277 387 SMART mt_12 266 297 IPR003690 GO:0003690|GO:0006355
Vifa1g09277 387 FunFam Mitochondrial transcription termination factor-like 147 361 - -
Vifa1g09277 387 PANTHER CGI-12 PROTEIN-RELATED 45 358 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09277 Vifa-Chr1 1468013885 1468015048 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa1g09277 mTERF 1.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09277 K15032 - gmx:102666622 380.948