Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09272 ATGTGGAAGGAGAAAGTTGATGCCTTTAACAAGTGGGGTTGGTCTCATGAAGATGTCGTTCAAGCATTTAAAAGGCAACCTTATTGTATGCTAACATCCGTTGACAAGATTAATTTGGTGATGGATTTTTGGGTTAAACAATTGGGCTGGGATGCTCTGGCCCTTGCCAAGCAACCGTCCGTTTTTTCCTTAAGTTTAGAAAAAAGGATCATTCCGAGGGCCTCAGTTGTGCAATTTCTTCTGAATAATGGTTTGAGGAGTAAGAAAGCAAGCTTAACTTCTCCATTTGTAGTGCCTGAGAAGTCATTTCTTGATAGGTTTATAAGAGATTTTAAGGAGTCGGCGTATCTATTAAAGTTGTACGAGGAGAAACGCGAGCTTGCATGGACCAAGGACAAAACTTGCATGTCATGA 414 0.4082 MWKEKVDAFNKWGWSHEDVVQAFKRQPYCMLTSVDKINLVMDFWVKQLGWDALALAKQPSVFSLSLEKRIIPRASVVQFLLNNGLRSKKASLTSPFVVPEKSFLDRFIRDFKESAYLLKLYEEKRELAWTKDKTCMS 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09272 137 Pfam mTERF 3 103 IPR003690 GO:0003690|GO:0006355
Vifa1g09272 137 PANTHER CGI-12 PROTEIN-RELATED 1 110 IPR003690 GO:0003690|GO:0006355
Vifa1g09272 137 SMART mt_12 52 86 IPR003690 GO:0003690|GO:0006355
Vifa1g09272 137 SMART mt_12 20 51 IPR003690 GO:0003690|GO:0006355
Vifa1g09272 137 Gene3D Transcription termination factor 3, mitochondrial 1 115 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09272 Vifa-Chr1 1467864106 1467864519 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa1g09272 mTERF 5.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09272 K15032 - mtr:25488156 198.364