Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09271 ATGTTCAACTTCAATAGAACCCTAATCTATTTCAAGACCTTAACTTCACCACTAAACCCTAATCCTCTTCTCCACCACTACCCATCACTATTTTCTCTCCATTTCTGCACTAAAACTTCCGATTCAACCTCCTTTGCAGAATCCTACCTCATCCACAATTTCAATTTCTCCCCACAATTTGCTGCCAAACTTTGCTTCACCCACCGTCTTCGATTCAAAACCACCCAAAAACCTGACTCTGTTTGCAAATTCTTCACAAACCACGGTTTCTCAGACACCCAACTTCACAATATGATTACCAAGGTACCTGACCTACTTTCCTGCAACCCCTCCAAAAGGGTGTTACCAAAGTTTCAATTTTTACTCTCCAAAGGTGCTTCCAACTCCGACATTGTTAACCTTGTCACTAAGAGCCCTAGACTCTTGTCTCCTAGCTTGAAGAATCATATAGTCCCAACCTATGAATTGGTTTATAGATTCTTGCAATCAGACAAGGAAATTATTGCGTGTGCCTTTCAGAATCCAGATTTACTCTGTGCTCATCTTGTGCCGCGTAACATTACAATGCTGATTGAGAATGGAGTGTCGGACTCGAATATTGCAAGAGTGCTTCGGATTCAGAGTCGGATATTCAAGGTACGTGACATGCTGAAGTTTGTGGAGGAAGTGAAGAATTTGGGGTTTGATCCTTCGAAAATAATTTTCTCAATAGCGTTGATTGCTAAAACATCGGTAAGCAAAAACTTGTGGGAGAAAAAAGTTGAAGCCTTTAAGATGTGGGGTTGGTCGGATGAAGATGCTTTTGAAGCATTTAGGAAGAAACCTTATTGTATGTTAACTTCTGTTGATAAAATAAACTCAGTGATGAGGTTTTGGGTAAATCAGTTGGGTTGGGATGCTATGGCCATTGCCAGAGCTCCGTATATTTTATCATTAAGTTTGGAAAAAAGGATCATTCCCAGGGTCGCTGTTGTGCAGTTTCTTCTTAGTAAAGGTTTGACAAATAAGAATGCAAGCTTAACTTATCCGTTGGTAGTGTCTGAGAAGATGTTTCTGGATATGTTTATAAAACGTTTTAAGAATGAGTCTTCTTATCTATTAAAGTTGTATGAGGAAAAACTCAATCCTGCATACACCAGGGACAACAAGACTTGCATGCTGTGA 1164 0.3978 MFNFNRTLIYFKTLTSPLNPNPLLHHYPSLFSLHFCTKTSDSTSFAESYLIHNFNFSPQFAAKLCFTHRLRFKTTQKPDSVCKFFTNHGFSDTQLHNMITKVPDLLSCNPSKRVLPKFQFLLSKGASNSDIVNLVTKSPRLLSPSLKNHIVPTYELVYRFLQSDKEIIACAFQNPDLLCAHLVPRNITMLIENGVSDSNIARVLRIQSRIFKVRDMLKFVEEVKNLGFDPSKIIFSIALIAKTSVSKNLWEKKVEAFKMWGWSDEDAFEAFRKKPYCMLTSVDKINSVMRFWVNQLGWDAMAIARAPYILSLSLEKRIIPRVAVVQFLLSKGLTNKNASLTYPLVVSEKMFLDMFIKRFKNESSYLLKLYEEKLNPAYTRDNKTCML 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09271 387 SMART mt_12 300 334 IPR003690 GO:0003690|GO:0006355
Vifa1g09271 387 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Vifa1g09271 387 SMART mt_12 96 127 IPR003690 GO:0003690|GO:0006355
Vifa1g09271 387 SMART mt_12 132 168 IPR003690 GO:0003690|GO:0006355
Vifa1g09271 387 FunFam Mitochondrial transcription termination factor-like 146 363 - -
Vifa1g09271 387 PANTHER CGI-12 PROTEIN-RELATED 42 360 IPR003690 GO:0003690|GO:0006355
Vifa1g09271 387 Gene3D Transcription termination factor 3, mitochondrial 162 364 IPR038538 -
Vifa1g09271 387 Pfam mTERF 83 231 IPR003690 GO:0003690|GO:0006355
Vifa1g09271 387 Pfam mTERF 245 352 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09271 Vifa-Chr1 1467607157 1467608320 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa1g09271 mTERF 1.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09271 K15032 - mtr:25488156 501.516