Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09266 ATGGATCCTGTAAGAGGTGTGGGTAGTGTTGTGGGGACTGTGCTGATTCCCATGCGATTTGTGTGGCCATATGGTGGAAGGAGTGTTTTTCTCAGTGGTTCTTTCAAAAGGTGGTCTGAGCTTTTGCCAATGTCTCCGATGGAAGGTTGCCCAACAGTGTTTCAAGTTATTTATAGATTGCCCCCTGGTTACCATCAGTACAAGTTTTTTGTTGATGGGGAATGGCGGCATGATGAGCATCAACCTTATGTTCACGGACAATATGGGATAGTCAACACTGTCTTATTGGCGACTGATCCTAACTACATACCTGTTATAAATTTAGACATTGCTCCTGGTAGTAACATGGATGTGGATAATGAGACTTTTTGCCGCGCGGTTCAGGTGACAGAAGGTACATTGAGCGAGGTGCTTCCAAGAATATCAGATACTGATGTACAGGTCTCTCGTCAGCGTATTTCTGCATTTCTGTCTATGCACACAGCTTACGAATTACTTCCCGAGTCAGGCAAGGTTGTTGCATTGGATGTTGATTTACCAGTGAAACAAGCATTTCATATACTGCATGAGCAGGGAATATACATGGCTCCTCTGTGGGACATGTGCAAGGGGCAGTTTGTTGGTGTTCTCAGTGCTTTGGATTTCGTCTTAATTTTAAGGGAGTTAGGGAATCGTGGGTCTAATCTGACAGAAGAGGAGCTTGAAACACATACCATATCGGCTTGGAAAGAAGGAAAGTCATATCTAAACAGACAGAACAATGGACATGGAACTGCATTTTCTAGACATCTTGTTCACGCAGGGCCATATGATAATCTGAAAGACATTGCCCTGAAGATCTTGCAAAAGGCGGTTTCAACAGTTCCTATTATCCATTCATCTTTAGAAGATGGTTCTTTTCCGCAGTTACTACATCTTGCTTCACTGTCAGGAATACTCAAATGTATTTTAGGAATTGCTCTAGTTCATTGCCTATACTACAACTTCCAATATGTGCAATACCTCTCTTCTCTTGCTTCAGCCCTGAATTTATTAGTTCAAGCACAAGCAAGTTCAATACCTATTGTTGATGATAATGACTCATTGCTGGATATATATTGTCGGAGTGATATAATGGCTTTGGCAAAGGACAGGGCATATACACATATCAATCTTGATGAAATGACCGTTCAACAGGCTTTACAGTTAGGCCATGACGTGTGTAGTCCCTACGAGCCTAGAAGTCAAAGATGTCAAATGTGTTTGCGTTCTGATTCACTGCATAAAGTGATAGAGCGTTTGGCAAATCCAGGTGTGAGGAGGATTGTTATTGTGGAAGCTGGCAGCAAGCGTTTAGAAGGCATCGTCTCATTGAGTGACATATTCAAGTTCTTTCTAAGTTAA 1383 0.4208 MDPVRGVGSVVGTVLIPMRFVWPYGGRSVFLSGSFKRWSELLPMSPMEGCPTVFQVIYRLPPGYHQYKFFVDGEWRHDEHQPYVHGQYGIVNTVLLATDPNYIPVINLDIAPGSNMDVDNETFCRAVQVTEGTLSEVLPRISDTDVQVSRQRISAFLSMHTAYELLPESGKVVALDVDLPVKQAFHILHEQGIYMAPLWDMCKGQFVGVLSALDFVLILRELGNRGSNLTEEELETHTISAWKEGKSYLNRQNNGHGTAFSRHLVHAGPYDNLKDIALKILQKAVSTVPIIHSSLEDGSFPQLLHLASLSGILKCILGIALVHCLYYNFQYVQYLSSLASALNLLVQAQASSIPIVDDNDSLLDIYCRSDIMALAKDRAYTHINLDEMTVQQALQLGHDVCSPYEPRSQRCQMCLRSDSLHKVIERLANPGVRRIVIVEAGSKRLEGIVSLSDIFKFFLS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09266 460 Gene3D - 142 319 IPR046342 -
Vifa1g09266 460 Gene3D Immunoglobulins 13 96 IPR013783 -
Vifa1g09266 460 ProSiteProfiles CBS domain profile. 165 227 IPR000644 -
Vifa1g09266 460 SUPERFAMILY E set domains 16 97 IPR014756 -
Vifa1g09266 460 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 145 458 - -
Vifa1g09266 460 SMART cbs_1 171 220 IPR000644 -
Vifa1g09266 460 SMART cbs_1 328 376 IPR000644 -
Vifa1g09266 460 SMART cbs_1 410 459 IPR000644 -
Vifa1g09266 460 FunFam Sucrose nonfermenting 4-like protein 13 98 - -
Vifa1g09266 460 ProSiteProfiles CBS domain profile. 407 460 IPR000644 -
Vifa1g09266 460 Gene3D - 320 460 IPR046342 -
Vifa1g09266 460 Pfam Glycogen recognition site of AMP-activated protein kinase 16 98 IPR032640 -
Vifa1g09266 460 SUPERFAMILY CBS-domain pair 152 317 IPR046342 -
Vifa1g09266 460 Pfam CBS domain 412 458 IPR000644 -
Vifa1g09266 460 CDD E_set_AMPKbeta_like_N 17 95 - -
Vifa1g09266 460 SUPERFAMILY CBS-domain pair 333 459 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09266 Vifa-Chr1 1466637716 1466650540 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09266 25 84 Protein tyrosine phosphatase (PTP) family AT3G52180 36.066 9.14e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09266 - - gmx:100785692 752.281