Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09263 ATGAAGCGTAACACCTCGTGTAACGTTCATGAAACTCTTTCATATTTCCATAACTGTCGAGCCGCTCCCACACACACACACTATATAAAAATCATCACCTTCGATAAAAACACCCATTTCCATTGTCTTCTTCTTACGGTCTACTATTGTGGAGGGCCCTCAACTCAGCTTGTTTTAGGGTTTCTTTCGATTAAAGTCAACTTGTTAATAATGGAGAAAGATAGCAACTATTCTGCACCACCGTGTTTCAACACACTTGACTACTCCCTTGATCAACAATACCAGCAGCTCACAAAATATCGTGTCGGCCAAACTTCCGGTGAAAACAATAACGGAATGGTGGATAATTACATGCCCCAAACACAAAACTCAGATTTTGGACCTAAATTAGCCTTAAACCGGCAAGAGTCCGAGATCGACGACCCCGTTTATTTTCTCAAGTTTCCTGTCTTAAACAACAAGATGGAAGACCAAAACTTGATGTTGAATCAAGATGACGAATTGGTAGATAATTTAAGAGATCGTGAAGAAACTCGGGTTTCTGATGAGAACAACTCGGTGCAGCTTGTGCAAGAGACGAATTGTGCACTCGTGCAAGAGAACAGCAAGAAGAGGAAGAGACCAAGAACGGTTAAGACAAGTGAAGAAGTTGAGAGTCAACGCATGACTCATATCGCTGTTGAAAGGAATCGAAGGAAGCAAATGAATGAGCATCTTCGCGTCCTCAGATCCCTCATGCCTGGTTCATACGTTCAAAGGGGTGATCAAGCATCTATAATTGGTGGAGCTATAGAATTTGTTAGGGAATTGGAACAACTTCTTCAGTGTCTAGAATCACAAAAAAGAAGAAGACTAGTTGGAGAAGCACAGTCAAAACAAGTTGGGGATTCAACACAACAACAAGCTCCATTTTTTCAGCAAGCTCCTTTACCAAATGAGCAGATGAAGATAGTTGAGATGGAAACTGGACTTGAAGAAGAAACTGCAGAGAGTAAGTCATGTTTGGCTGATGTAGAAGTGAAAGTTTTAGGATTTGATGCAATGATTAAAATCCTATCAAGAAGAAGGCCTGGACAGTTGATCAAGACCATTGCTGCCCTTGAAGATATGCAGCTTATTATCCTTCATACCAACATCACCACTATTGAACAAACCGTTCTTTATTCATTCAATGTCAAGGTGGCTAGTGATACAAGGTTCACCGCAGAAGATATAGCAAGCTCCGTTCAGCAGATACTAAGTTTTATTCATGCAAACACTAGCATGTGA 1269 0.4082 MKRNTSCNVHETLSYFHNCRAAPTHTHYIKIITFDKNTHFHCLLLTVYYCGGPSTQLVLGFLSIKVNLLIMEKDSNYSAPPCFNTLDYSLDQQYQQLTKYRVGQTSGENNNGMVDNYMPQTQNSDFGPKLALNRQESEIDDPVYFLKFPVLNNKMEDQNLMLNQDDELVDNLRDREETRVSDENNSVQLVQETNCALVQENSKKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLVGEAQSKQVGDSTQQQAPFFQQAPLPNEQMKIVEMETGLEEETAESKSCLADVEVKVLGFDAMIKILSRRRPGQLIKTIAALEDMQLIILHTNITTIEQTVLYSFNVKVASDTRFTAEDIASSVQQILSFIHANTSM 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09263 422 Pfam Helix-loop-helix DNA-binding domain 220 271 IPR011598 GO:0046983
Vifa1g09263 422 MobiDBLite consensus disorder prediction 200 221 - -
Vifa1g09263 422 FunFam Basic helix-loop-helix transcription factor 210 285 - -
Vifa1g09263 422 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 219 287 IPR036638 GO:0046983
Vifa1g09263 422 Gene3D - 211 285 IPR036638 GO:0046983
Vifa1g09263 422 PANTHER TRANSCRIPTION FACTOR FAMA 150 413 IPR044283 GO:0003700|GO:0010052
Vifa1g09263 422 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 219 270 IPR011598 GO:0046983
Vifa1g09263 422 SMART finulus 225 276 IPR011598 GO:0046983
Vifa1g09263 422 CDD bHLH_AtFAMA_like 222 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09263 Vifa-Chr1 1466390651 1466393128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09263 116 422 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 63.422 5.27e-126 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g09263 HLH 9.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09263 K26213 - gmx:100813515 471.085