Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09250 ATGGCCGGACCATCATGGCTGGTGGACAAAAGTAGAATTGCAACCAAAATAAAAAGTGCAATGGAGTCATATGCTCCAGAAAATGTTACATGGAAAAGCAATCCTACCAAGGCTTGTCCTAATTGTCAGCATTGTATTGACAATAATGATGTTGCAAATGAGTGGCCAGGCTTGCCAAAAGGTGTCAAATTTGATCCATCTGATCAGGAAATAATATGGCATTTGCTTGCAAAAGTTGGTGTAGGAAATTTAAAACCTCATCCTTTCGTTGATGAGTTTATTACTACTCTTGAAGTGGATGATGGGATTTGTTACACTCATCCTCAAAACTTACCAGGTGTTAAGCAAGATGGAAATGCATCCCACTTCTTCCACAGAGCGATTAAGGCATATAATACTGGCACTCGAAAGCGGCGAAAGATTCACGATCAAGATTTTGGTGATGTCCGCTGGCACAAAACTGGAAGAACTAAACCAGTAATCTTGAATGGGGTTCAAAAAGGTTGTAAAAAGATTATGGTTCTGTATATGAGCAGTGCGGGAGGAGGAAAAGCTGAGAAAACTAATTGGGTTATGCATCAATATCATTTGGGAACAGAAGAGGATGAAAAGGATAGAGAATTTGTTATCTCTAAAGTGTTTTACCAGCAGCAACAAGTCAAATTGGGTGATAAAGATGAACATGATATTCCTGAAGTCATCGAAGCAACAATTGTAAAAGTGGATCCAGTCACTCCCAAATCTGTGACTCCCGAGCCTCCTTATAATGAAAACAAGTATTCCGATGTTGATGTAGGACATCAAACACTTGTTGTTCCTCAGCATCAGATGGTTTGTCTGGATGAAATTCAAGCTGATTGTGAAGAGAATGCAAATGATGATCTATCCATGGTAGAAACTGAACATAATGAAGTGACAGAGAATATCGAAAATAATGGAGATGAAAGCCAAAAGTGGTGGGATAGTGAATCACAAAATCTGTTGGATTCACAACAACTGGTTGAAGCGTTGTGCTTGTGTGATGATTTATTTCATAGCCAGTCTCCCACTAGAGATGGCAAAGATGAAAAAAATAACCAAACAGGTCTTTCTGTATATGCTGAATTAGGACCAGAGCATCTAAAGAAGGATATTGAAGACTGTCAAAATCTTGTCCTTGACCCTCCAAATGATGTTGAGCATGACACAAATTCAGAGTTACGACTAAGTCAGCTGGAGTTTGGTTCGCAAGATAGCTTTATATCATGGGGTTACAGCAACAAGGCATTAGGGTAG 1275 0.3929 MAGPSWLVDKSRIATKIKSAMESYAPENVTWKSNPTKACPNCQHCIDNNDVANEWPGLPKGVKFDPSDQEIIWHLLAKVGVGNLKPHPFVDEFITTLEVDDGICYTHPQNLPGVKQDGNASHFFHRAIKAYNTGTRKRRKIHDQDFGDVRWHKTGRTKPVILNGVQKGCKKIMVLYMSSAGGGKAEKTNWVMHQYHLGTEEDEKDREFVISKVFYQQQQVKLGDKDEHDIPEVIEATIVKVDPVTPKSVTPEPPYNENKYSDVDVGHQTLVVPQHQMVCLDEIQADCEENANDDLSMVETEHNEVTENIENNGDESQKWWDSESQNLLDSQQLVEALCLCDDLFHSQSPTRDGKDEKNNQTGLSVYAELGPEHLKKDIEDCQNLVLDPPNDVEHDTNSELRLSQLEFGSQDSFISWGYSNKALG 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09250 424 FunFam NAC domain-containing protein 8 67 220 - -
Vifa1g09250 424 Gene3D NAC domain 67 221 IPR036093 GO:0003677|GO:0006355
Vifa1g09250 424 SUPERFAMILY NAC domain 43 216 IPR036093 GO:0003677|GO:0006355
Vifa1g09250 424 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
Vifa1g09250 424 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 382 IPR044799 GO:0003700
Vifa1g09250 424 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09250 Vifa-Chr1 1463856857 1463861247 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09250 5 223 NAC Transcription Factor Family AT4G28500 51.327 5.92e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g09250 NAM 7.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09250 - - gmx:100799488 665.996