LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g09244	ATGTCTGCGCCGTCCCCACCTCCTTTCACATCCACTCCTTCGCCACACCAACCACCTTCCTCTTCTTCACCCTTGCTCCCGCCTCCTACTCCAACTCCGCCACCACGCCCTCCTCCACCATCGCTGCCTCCTACTCCAACTCCGCAATCACGCCCTCCTCCATCGCCCCAATCGCCACTTCCGCCTTCACCACCACTACCACCGTCAGCTCCACCTCCATCCAATCCACCAACATCACCGTCAGCTCCACCTCCATCCAGTCCACCAACATCACCGTCAGCTCCACCTCCATCCAGTCCACCAACATCACCGTCAGCTCCACCTCCATCCAGTCCACCCTCATCACCGCCACCGGAAAATTCACCACCTCCTTCCGTCCTAAAACCGCCCCCCCAAAACTCAACTCAAACTCCACCTCCTAGGTCATCGTCTCCACCACCCCCCAAAAACTCAACTCCAACTCCACCACCAGCATCACCTCCTAGATCATCGCCTCCACCACCCCCCAAAAGCTCAACTCAAACTCCACCACCTGCATCACCTCCATCACCAACATTAACCCCTACTCCTCCTGCCTCACCCAGTACACACCAACCTACGCCTTCAAATTCACCACCAAGGTTATCTCCTCCATCACCCTCAATCATTCTGTTGTCGCCCCCGCCGCCACACAACGAATCAGAAACCGGAAGCAGTGGTGGAATTGGTTCTGGTGCTCTAGTGGCTGTTGCTGTGTTTGGTGGAATTCTATTGCTTGGCTTCATTGGAGTTGCTATCTGGTGTTTCAGGAGGCAAAACAAAAAGGATTCTCCTAGTGATGCTTATGTCGGGCCTTCCACTCTTCCCTCCTCAACTCAATCAGATTCATCCTTTTTTAAGATACATGCTGCCTCTGCTCCTTTTGTAACAAGTGGATCTAGCAGTAATGTTGAACATAAACCATCTGGCCCTGATGGTGGAATGACCTACTCAAGGAACTGGTTTTCATATGAAGAACTAATCAAAGCCACAGATGGTTTCTCAACTCTGAATCTTTTGGGAGAGGGTGGCTTTGGTTTTGTATATAAAGGATGTTTACCTGATGGGAGAGAGATAGCAGTGAAGCAGCTCAAAATTGGTGGAAGTCAAGGGGAGAGAGAATTCAAAGCTGAAGTTGAGATTATTAGTCGCATACACCATCGCCATTTGGTTTCTTTAGTTGGATACTGCATTCAAGATAACAGAAAAATACTTGTCTATGACTATGTACCTAACAACACCCTTCATTTTCATCTACATGAAAAAGGTCAACCGGTGCTGCAATGGGAAAAACGTGTTAAAATCGCAGCTGGTGCAGCTCGAGGAATAGCTTATCTCCATGAAGACTGCAATCCTCGGATTATTCACAGAGATATCAAGCCATCTAACATTCTTTTGGATTACAACTATGAAGCTCGTGTCTCAGATTTCGGTCTAGCCAAATTGGCTCTGGATACAAATACACATGTAACAACGCGTGTCATGGGAACTTTTGGGTATGTTGCCCCTGAATACGCGTCAAGTGGAAAATTGACTGACAGATCTGATGTATATTCTTTTGGTGTTGTAATTTTGGAGCTCATTACCGGACGGATGCCCGTAGATCCATCACAACTGGAAGATGAGAGTCTAGTTGAATGGGCTCGGCCTTTATTAAGTGATGCACTTGAAACTGGGGAATTTGAGAGTTTTGTAGATCCAAAGCTAGGAAAGAAGTACATTGATACTGAAATGTTTTGCATGATTGAAGTTGCTGCTGCTTGTGTTCGGCATTCAGCTGCTAAGAGACCTCACATGGGACAGGTTGTTAGAGCTTTTGAAAGCTTAGAAACTTCGGATTTAACAAATGGAATGCGAGTTGGTGAAAGCCAGGCGTTTGACTCTGCACAGCAATCTGAAGAAATAAGATTATTTCAGAGGATGGCATTTGGTAGTCAAAACTATAGTTCGGACTTCTATAATCACTCACTCTAG	1992	0.4719	MSAPSPPPFTSTPSPHQPPSSSSPLLPPPTPTPPPRPPPPSLPPTPTPQSRPPPSPQSPLPPSPPLPPSAPPPSNPPTSPSAPPPSSPPTSPSAPPPSSPPTSPSAPPPSSPPSSPPPENSPPPSVLKPPPQNSTQTPPPRSSSPPPPKNSTPTPPPASPPRSSPPPPPKSSTQTPPPASPPSPTLTPTPPASPSTHQPTPSNSPPRLSPPSPSIILLSPPPPHNESETGSSGGIGSGALVAVAVFGGILLLGFIGVAIWCFRRQNKKDSPSDAYVGPSTLPSSTQSDSSFFKIHAASAPFVTSGSSSNVEHKPSGPDGGMTYSRNWFSYEELIKATDGFSTLNLLGEGGFGFVYKGCLPDGREIAVKQLKIGGSQGEREFKAEVEIISRIHHRHLVSLVGYCIQDNRKILVYDYVPNNTLHFHLHEKGQPVLQWEKRVKIAAGAARGIAYLHEDCNPRIIHRDIKPSNILLDYNYEARVSDFGLAKLALDTNTHVTTRVMGTFGYVAPEYASSGKLTDRSDVYSFGVVILELITGRMPVDPSQLEDESLVEWARPLLSDALETGEFESFVDPKLGKKYIDTEMFCMIEVAAACVRHSAAKRPHMGQVVRAFESLETSDLTNGMRVGESQAFDSAQQSEEIRLFQRMAFGSQNYSSDFYNHSL	663

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g09244	663	PRINTS	Proline rich extensin signature	21	37	-	-
	Vifa1g09244	663	PRINTS	Proline rich extensin signature	53	74	-	-
	Vifa1g09244	663	PRINTS	Proline rich extensin signature	41	53	-	-
	Vifa1g09244	663	PRINTS	Proline rich extensin signature	5	17	-	-
	Vifa1g09244	663	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	250	647	IPR047117	-
	Vifa1g09244	663	ProSiteProfiles	Protein kinase domain profile.	340	615	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g09244	663	Gene3D	Phosphorylase Kinase; domain 1	307	415	-	-
	Vifa1g09244	663	SUPERFAMILY	Protein kinase-like (PK-like)	320	612	IPR011009	-
	Vifa1g09244	663	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	460	472	IPR008271	GO:0004672\|GO:0006468
	Vifa1g09244	663	Pfam	Protein kinase domain	341	550	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g09244	663	CDD	STKc_IRAK	346	615	-	-
	Vifa1g09244	663	FunFam	proline-rich receptor-like protein kinase PERK8	416	626	-	-
	Vifa1g09244	663	ProSitePatterns	Protein kinases ATP-binding region signature.	346	368	IPR017441	GO:0005524
	Vifa1g09244	663	MobiDBLite	consensus disorder prediction	1	232	-	-
	Vifa1g09244	663	SMART	serkin_6	340	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g09244	663	Gene3D	Transferase(Phosphotransferase) domain 1	416	635	-	-
	Vifa1g09244	663	FunFam	Proline-rich receptor-like protein kinase PERK8	312	415	-	-
	Vifa1g09244	663	MobiDBLite	consensus disorder prediction	1	220	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g09244	Vifa-Chr1	1463143371	1463149411	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g09244	137	662	Trihelix Transcription Factor Family	AT5G38560	55.657	0.0	568

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Vifa1g09244		Pkinase	1.9e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g09244	-		-	tpra:123889774	751.51