Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09239 ATGGATGGAGGTAGTTGCTTAGACGAAAGCACCACAACCGAATCACTTTCCATAACAATATCGCCAGCGTCAACACCGCCGCCTCCAAAGAGCCTATGCCGCGTCGGCAGCGGCGCCAGCGCAGTTGTTGACTCCGACGGAAGCACCGTTGGAGAAGCCGAGTCACGGAAGCTTCCTTCTTCCAAATACAAAGGCGTGGTGCCACAACCAAACGGTCGTTGGGGAGCACAGATTTACGAGAAGCACCAGCGTGTGTGGCTTGGTACCTTTAACCAAGAAGACGAAGCTGCAAAAGCTTACGACGTCGTCGTACAACGGTTCCGCGGAAAGGATGCCGTAACGAACTTCAAACCATTATTATCGGGCGATGGCAACGACGAGATGGAGGTTGAGTTTCTAAACTCGCATTCGAAGTCGGAGATCGTGGACATGTTAAGGAAGCACACATACAATGACGAACTTGAACAGAGTAAACGTGGAAACCGATTCGTCAACATACGAATCCGCATCCACGGCGCTGAGAACTTTACCGGCTCAGAACACAGCGCGTGTGAAAGAAAAGCGCGTGAGGCTCTGTTCGAGAAGGTGGTTACGCCGAGTGACGTTGGGAAGTTAAATAGGTTAGTTATACCGAAACAGCACGCGGAGAAGCATTTCCCTTTACAGGGAAGTGCGTCGGCAGGGAAGAGAGTGCTTTTGAATTTTGAAGACGTTGGAAGGAAAATGTGGCGGTTTCGATACTCATATTGGAACAGTAGCCAAAGCTACGTTCTGACGAAAGGTTGGAGCCGGTTTGTTAAAGAGAAAAATCTGAAAGCCGGTGATACAGTTTGTTTTCAACGGTCTACTGGACCGGATAAACAGCTCTTTATTGACTGGAAAGCAAGAGAGAATGTTAATGAGGTTAGACCGGTTGTTGAGCCGGTTCAGATGGTTCGGCTATTTGGGGTTAATATTTTCAAACTCCCTGGATCCGATGATAATAGTAATGTCAATGGCTTCTGCAATGGAAAGAGGATAGAGATGGAAATGTTTACTTTTGACTCTTGCAAGAAGCCTAAAATTATTAGAGCTTTGTAA 1080 0.4759 MDGGSCLDESTTTESLSITISPASTPPPPKSLCRVGSGASAVVDSDGSTVGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNQEDEAAKAYDVVVQRFRGKDAVTNFKPLLSGDGNDEMEVEFLNSHSKSEIVDMLRKHTYNDELEQSKRGNRFVNIRIRIHGAENFTGSEHSACERKAREALFEKVVTPSDVGKLNRLVIPKQHAEKHFPLQGSASAGKRVLLNFEDVGRKMWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFQRSTGPDKQLFIDWKARENVNEVRPVVEPVQMVRLFGVNIFKLPGSDDNSNVNGFCNGKRIEMEMFTFDSCKKPKIIRAL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09239 359 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 57 327 IPR044800 GO:0003700
Vifa1g09239 359 CDD AP2 61 116 IPR001471 GO:0003700|GO:0006355
Vifa1g09239 359 Pfam AP2 domain 61 109 IPR001471 GO:0003700|GO:0006355
Vifa1g09239 359 SMART B3_2 193 297 IPR003340 GO:0003677
Vifa1g09239 359 ProSiteProfiles B3 DNA-binding domain profile. 193 296 IPR003340 GO:0003677
Vifa1g09239 359 Gene3D AP2/ERF domain 61 118 IPR036955 GO:0003700|GO:0006355
Vifa1g09239 359 MobiDBLite consensus disorder prediction 1 21 - -
Vifa1g09239 359 Gene3D - 181 304 IPR015300 -
Vifa1g09239 359 Pfam B3 DNA binding domain 193 293 IPR003340 GO:0003677
Vifa1g09239 359 MobiDBLite consensus disorder prediction 1 38 - -
Vifa1g09239 359 SUPERFAMILY DNA-binding pseudobarrel domain 192 294 IPR015300 -
Vifa1g09239 359 ProSiteProfiles AP2/ERF domain profile. 62 117 IPR001471 GO:0003700|GO:0006355
Vifa1g09239 359 FunFam AP2 domain-containing protein RAP2.8 61 118 - -
Vifa1g09239 359 SUPERFAMILY DNA-binding domain 61 117 IPR016177 GO:0003677
Vifa1g09239 359 SMART rav1_2 62 123 IPR001471 GO:0003700|GO:0006355
Vifa1g09239 359 CDD B3_DNA 192 282 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09239 Vifa-Chr1 1462166082 1462167161 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09239 5 358 RAV Transcription Factor Family AT1G13260 60.615 5.02e-138 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Vifa1g09239 B3 2.3e-27 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09239 K09287 - gmx:100776987 510.375