Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09233 ATGGACTCACCGCTTTATTTGTTTTCCGCTAAACGCAAAGCTTCAACTGAAACTTCATCTAAGGAAGGATGCAAAAAACCAAGATTTTCAAGTGGTAGCTTGCCAAATTCACATGTTAGTGTTGTAGATGACAAAAATCCGCTTGCCATCTCAAATGTCACAGATTGTTCAGAGAGCAGAAAATTTGGAAGCGTGACAAAGAATATTGAAGCCCTTATGACCCAAAGAATGCAAATATTGGGCCCTTACATCCCAAAATATCCTAGACTTGCGAATCAATTAATGAAAGTGGTGACAGATCTTGATGAAAAAACTCGCAACTCAGAAAATAAAAAAGTTACTAGTATGTCACATCCAAATGTCATGGATTTGGATGGGGGGCACATTGAAAAGGATGCTTTGACACCAAGAAGAGAAAAGGATGTTCCTGCAGCACCAACTGTTGTCATCATTGATTCAGATGAGGAAGATGATAGGGATCAAAAGTGTTTTCTTCCATTTCAAAAAGTTGTATTGCCGAAACCAGATCAGTCTCCTGCATTAAAAATGATTGGCTATCATGCTCCCATTGCTTGTCATGGGGAAAATGCAGATCTAAAATTTGAAACAAGTCCGCATCCTAAAGATAACACATGGGAAGACGAAGATGTTTATGTTGATGCACATGAGGAAGAAGATATTAAAGTTGATGCTGAAACAAGTCTCCCTCCTGAAGGTAACACAAGGAAAGTTAAAGGTGTTTATGTTAATGTACAGGAGGAAGAAGATAACAGGGCTGATGCCGAAACAAGTCTACCTCCTAAAGATAACACAAGGAAAGAAAAATGTGTTTATGTTGGTGTACATGAGGAAGAAGATAAGAAGGCTGATGCTGAAACAAGTCTGCCTCCTAAAGATAACAGAAGCAAATATAAATGTGTTTATGTTGGTGTACAAGAGGAAGAAGATACTAAGGCTGATGCTGAAACAAGTCTGCCTCCTAAAGACAACGCAAGGAAAGATAAATGTGTTTATCTTGGCGTACATGAGGAAGAAGATACTAAGGTTGATGCTGAAACAAGTCTGCCTCCTAAAGACAACAGAAAAGATAAAGGATTTTATGTTGGTGTACACGAGGAAGAAGATAAAAAGGTTGATGCTGAAGATGAGAAGCTAGAAGATACTTGGAGGGAGATGTATATGGCATTAGAAACTTCTAAAGATGTTTCTGCAGATCATCTACTCGGAGAAGAAGAAGAAAAAGATGCTGACTGTGATCACTCTTTTGTTTTAAAAGATGATCTGGGTTATGTTTGTCGCGTTTGTGGGGTTATTGACAGAGGAATTGAAACCATATTTGAGTTCCAATACAAGGTTAAAAGGAGCACAAGAACTTACATGTCTGAATCCTGGAATGCCAAAGCAAAAGATGATTTATTTGAAGCTAAGATTGCTGAAGATGATCTCATGGTAACTGAAATTTCAGCACATCCTAGGCATGCAAATCTGATGAAACTGCACCAAGTCGAAGGATTCAATTTTCTTGTCAGAAACCTGGTGGGGGACCATCCTGGGGGATGCATTCTGGCTCATGCTCCAGGATCTGGAAAGACTTTCATGATTATCAGTTTCATACAGAGTTTTCTAGCAAAGTATCCCAATGCAAGGCCTCTAGTGGTGCTTCCTAAGGGAATACTGTCGACTTGGAAAAAAGAATTTCAGACATGGCAAGTGGAAGATGTACCACTCTATGACTTTTACACTGTGAAGGCTGAAAGTAGATCACAACAATTGGAAGTCTTAAAACAATGGGTGGATCACAAGAGTATCCTTTTCTTAGGATACAGACAGTTCACTTCCATTGTCTGTGATGACTACAATAACAATGTATCAATATCCTGCCAAGAGATATTGCTTAAGGTTCCCTCAATTCTCATTTTAGATGAGGGACACACTCCCAGGAATGAGAATACTGATACGGTACAGTCCCTTGCAAAAGTACAAACTCCAAGAAAAGTTGTACTGTCTGGAACTCTATATCAAAATCATGTCAAGGAGGTATTCAACGTGCTGAACCTTGTTCGCCCAAAGTTTAAACTGATGGAAACGTCCAAGCCTATTATCCGACGCATTAAAAGTAGGATCCATCTACCTGGTGTGAATGACTTTTGTGATTTGGTTGAAAACACTTTGCAGAAGGACCCGGATTTTAAAAGGAAAGCGGCTGTTATACATGATTTGCGGGAGATGACCAGTAAGGTACTGCACTACTATAAAGGAGATTTTCTTGATGAGCTTCCTGGCCTAGTAGATTTTACTGTGGTGCTCAAACTTACACCTAGACAGATGCATGAACTTGATAAAGTAAAGAGGATATATGGAAAGTTCAAGATGGCTTCTGTAGGTAGTGCAGTATATCTGCACCCAAAATTGAAACCAATTGCAGAGAAATGGGGTGAAAATTCTATATCTGATGATATAATTGATGATCTAATAGCAAATCTAGATGTGAGAGATGGAGTTAAATTAAAATTCTTTCGCAATATGCTGAACCTATGCGAATCTGCTGGGGAGAAGCTTTTGGTGTTCAGTCAATCTCTATTGTCTTTAAAATGTTTGGAACGAATAGCTATGAAATGGAAAGGCTGGAGTGTTGGCAAAGAAATTTTTGTAATTTCAGGAAAATCATCTACTGAAGAAAGGGAGGTTTCCATGGAAAAGTTTAACGGTTCGCCTGAGGCCAAAGTATTTTTTGGGTCAATTAAAGCATGTGGTGAGGGTATATCGTTGGTTGGGGCATCCCGTGTCATCATCTTGGATGTGCATCTCAACCCGTCTGTCACTCGTCAAGCTATTGGCCGTGCTTTCCGGCCAGGTCAGAAAAGGAAAGTGTTTGTGTATCGATTGATAGCTGCTGATTCTCCAGAAGAGGATGATCACAATACTTGTTTCAAGAAGGAGTTAATTTCAAAAATGTGGTTTGAATGGAATGAATATTATGGTGACAGAGCTTTTGAAGTTGAGACATTTGATGTGAAGGAATGTGGTGATCTGTTTCTAGAAAGTCCATTGTTAGGGGAAGATGTAAAAGCTCTGCATAAAAGGTAA 3087 0.3916 MDSPLYLFSAKRKASTETSSKEGCKKPRFSSGSLPNSHVSVVDDKNPLAISNVTDCSESRKFGSVTKNIEALMTQRMQILGPYIPKYPRLANQLMKVVTDLDEKTRNSENKKVTSMSHPNVMDLDGGHIEKDALTPRREKDVPAAPTVVIIDSDEEDDRDQKCFLPFQKVVLPKPDQSPALKMIGYHAPIACHGENADLKFETSPHPKDNTWEDEDVYVDAHEEEDIKVDAETSLPPEGNTRKVKGVYVNVQEEEDNRADAETSLPPKDNTRKEKCVYVGVHEEEDKKADAETSLPPKDNRSKYKCVYVGVQEEEDTKADAETSLPPKDNARKDKCVYLGVHEEEDTKVDAETSLPPKDNRKDKGFYVGVHEEEDKKVDAEDEKLEDTWREMYMALETSKDVSADHLLGEEEEKDADCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYMSESWNAKAKDDLFEAKIAEDDLMVTEISAHPRHANLMKLHQVEGFNFLVRNLVGDHPGGCILAHAPGSGKTFMIISFIQSFLAKYPNARPLVVLPKGILSTWKKEFQTWQVEDVPLYDFYTVKAESRSQQLEVLKQWVDHKSILFLGYRQFTSIVCDDYNNNVSISCQEILLKVPSILILDEGHTPRNENTDTVQSLAKVQTPRKVVLSGTLYQNHVKEVFNVLNLVRPKFKLMETSKPIIRRIKSRIHLPGVNDFCDLVENTLQKDPDFKRKAAVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLKLTPRQMHELDKVKRIYGKFKMASVGSAVYLHPKLKPIAEKWGENSISDDIIDDLIANLDVRDGVKLKFFRNMLNLCESAGEKLLVFSQSLLSLKCLERIAMKWKGWSVGKEIFVISGKSSTEEREVSMEKFNGSPEAKVFFGSIKACGEGISLVGASRVIILDVHLNPSVTRQAIGRAFRPGQKRKVFVYRLIAADSPEEDDHNTCFKKELISKMWFEWNEYYGDRAFEVETFDVKECGDLFLESPLLGEDVKALHKR 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09233 1028 MobiDBLite consensus disorder prediction 105 126 - -
Vifa1g09233 1028 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 838 1006 IPR001650 -
Vifa1g09233 1028 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 41 1026 IPR044567 GO:0080188
Vifa1g09233 1028 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 713 IPR027417 -
Vifa1g09233 1028 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 511 690 IPR014001 -
Vifa1g09233 1028 MobiDBLite consensus disorder prediction 12 37 - -
Vifa1g09233 1028 SMART helicmild6 867 952 IPR001650 -
Vifa1g09233 1028 Pfam Helicase conserved C-terminal domain 839 951 IPR001650 -
Vifa1g09233 1028 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 752 1012 IPR027417 -
Vifa1g09233 1028 Gene3D - 464 711 IPR038718 -
Vifa1g09233 1028 SMART ultradead3 493 703 IPR014001 -
Vifa1g09233 1028 Gene3D - 764 1017 IPR027417 -
Vifa1g09233 1028 CDD SF2_C_SNF 835 963 - -
Vifa1g09233 1028 Pfam SNF2-related domain 517 777 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09233 Vifa-Chr1 1461509771 1461516379 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09233 849 970 RAD5 or RAD16-like Gene Family AT5G43530 40.164 9.65e-16 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa1g09233 SNF2_N 3e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09233 K10875 - gmx:100795356 1142.87