Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09208 ATGGCATCTTCTGGTGTTGAAATTGCGACTTCTTCCCCGTTTGGTTGTGTTTTGAGAGATCGTAATCATCGCGATGGATATCGAGAGAGTAACAAAGTTAAAGCTACACATGGTGCTTTTCAAAGAAACATTAAGAACTTTGTTATGGATCATCTTAACACGTGCATTTCCATGTCTTCTGATTCTCAAACAACAGATGAAAACAAGAACGAGGGTCAAATCAATAGCAACAAGAACAATGATGATGGTTCTGCTTGGGTTTCAAAACCTGGCAACAATCTTGCGAAGATCCGTTTGACAAGAAACAATCCTAGTGATATCATCAACAACAAAGATGAGTCGAGTTTGGCTTCGTTGATTAGCCCGAGGCATTCGCAGCTTCTTGATCGTTGGGCAGCGAAACAAGCTCGTGAGATGGTGTCGACGTTGGAGAATGAAGCGGAGTTGTTATCCATTGACAACGCCATTGATGACGTGCCTATGAGGACAACTTGTTCTACTACCTCTGAGGGATGTTCTTCGGAGGTATCAAACCTCGGTGCATCTTCGCTTGTTCAGATATGGGAAAAAAGGCTTAACCAATCAAGTGGTTCCAAATCCAATACACCAATGGATAAAACAAGTCCAAATGGTGGTACAAGTGCGACTTGTAACAATGAGAATGTGTTTGTTGTGGTGGAACAAAGAGGGTCAGAAATTGGAGAATGTTTTGAAGGACAGTTATCAGGAAATGAAGAATCGTTCCCTGATTGGGAGTCTGATAAGACAGGTGAACAAAGTAGGTGGTGTTCGTCGGAGACAGGTGAACAAAGTAGGTGGTGTTCGTCAGAGAGTGATAGAGTCAGTGTTGCTGATATCATAAAGAAACTCACTTCTACGAGCCAAACTCAAAGTCCATGTCCATATTTCGGGGATGACAATGACAATGAAGGGTGTGGTAATAGCAGTGTGGCATGTTCTCCTCGTAAAGATTTTGCACCAGAACTTTCGGACCAAAAAGCTTTTCCTCAAGTGACTTGTTCACCCCGAATTAGAGGGCGTCGAGCCTTCAATGATTTGTTTATGCAGTTGGAGAAAGATAGACACGGGGAGCTAAAGAACCTGGCCGAACGTGGAACAGTCTCCAAGTTCACACAAAGAGGTCGCATTCAGGCATTACTACGACATAAATCTTTACAACGTGGTGCGGCAGCTAATATTCTACCTGACCAGAAACCAACATCATCTGAAGTAAGCAAACAAGTACAACCACAGGGGTCTGCAATTATGCAACTAAGGGAAAAATTTAACACTTGTGTGGAACAAAGAAGTACAGTCGAGGCAGAAGTAGCGAAGATACGAAATCCTCGCAAGGAGATTGTAAATAACATCACACGATTAGAAAACTCTTCCATTGCTGATCAACTCAGTAAAGATACAAGCAGACAGATTGCTAATGGAACTACGAGTCACACCATAGAAACGACAGAAAAGTCAGTGTCTCTCATTAGAGAAGAAGATATTCCAAGTTCTAATGTCAAATCTCAAGAAACATGTTTTGAGGCTCAGTGTGATAATGCAAAGGAAACTTCTGAGGCAGCTACGTCGGTGACTGATTCAAATGTTAATGAGAAAGACGAAGAGGAAATTAGCCATCAATACGAAGAAACCGATTATGATTGTGCAGTAGATGAAGAGGGAAGTAACCAGAACTATGATGAAAGCAATTGTGAAGAGATGTTGGAAGAGAACTATGATGAAAATAGTTATGACTGGTTTAGAGAAATTTCTCGACCGAGAAGCTATTGGGAAGAGCGAAGGCAATCTTGGTATAAAGAGATGCAAGACTCCGGCTCTCCAAATGACGATATACAAGTGCTTCTTCAAAGAAGAACAGTGTCGAACTTCCTTTCGAGCGACTTCCGAGAAAAAATGGACAGATTGATGCAATCTCATAAGGGAACACAAACACATTTAGTTACTAATCAAGACGATGAGATAGACAACGAAGCGTTGATGGCATTTTTCAAAGAACACCTACAACCTGAAAAAACTCCTCGAGAAAATGAAATAGAGAAAACAGTAGACGAAGAAGAGGAAACGTTAAACGAGGAAGAAGAAGAAGAAGAAGAGGAGGAGGAAAGGAAGCAAGATGATAAAGAGCATGAAGAGGAGCAAGGAGGAGAGAGCTTGGTAAGCGATTCGTATCATGAAGTCGGAGACTATTCAAATCAATCCTCATCATGGAGTTATAGAGACAATGAACCTGGTGACGATTTCGATAGAGTTGCTTCTACATCTTCACAACAACCTTATCAATCACCATCTTTCTATCATGAAAATACTCGGCGAAACTCCCCACCCATCAATCATCATTCAATTGAAATGGAAATCATATACGATATGAGAGGACACATGGAGCAACTTTATCAAGAAATGTCTGAACTAAGGAAATCAATAAAGAGTTGCATGGATATGCAAATGAAGATGCAGTTACATGAAAAGAAGTCACATGACAAAGTTGCTAAGAAAGGAAACTGTTGCATTTGCAATGAGACAAAAGCTGACTCGGTTTTTTACAGGTGTGGACACATGTGTGCATGTTTGAAGTGTGCCAATGAGTTACAATGGAAGAATGGAAAATGTCCAATATGTAGGGCTAAAATAGACGATGTTGTTCGAGTGCATGTTGAAGCTTAG 2679 0.4095 MASSGVEIATSSPFGCVLRDRNHRDGYRESNKVKATHGAFQRNIKNFVMDHLNTCISMSSDSQTTDENKNEGQINSNKNNDDGSAWVSKPGNNLAKIRLTRNNPSDIINNKDESSLASLISPRHSQLLDRWAAKQAREMVSTLENEAELLSIDNAIDDVPMRTTCSTTSEGCSSEVSNLGASSLVQIWEKRLNQSSGSKSNTPMDKTSPNGGTSATCNNENVFVVVEQRGSEIGECFEGQLSGNEESFPDWESDKTGEQSRWCSSETGEQSRWCSSESDRVSVADIIKKLTSTSQTQSPCPYFGDDNDNEGCGNSSVACSPRKDFAPELSDQKAFPQVTCSPRIRGRRAFNDLFMQLEKDRHGELKNLAERGTVSKFTQRGRIQALLRHKSLQRGAAANILPDQKPTSSEVSKQVQPQGSAIMQLREKFNTCVEQRSTVEAEVAKIRNPRKEIVNNITRLENSSIADQLSKDTSRQIANGTTSHTIETTEKSVSLIREEDIPSSNVKSQETCFEAQCDNAKETSEAATSVTDSNVNEKDEEEISHQYEETDYDCAVDEEGSNQNYDESNCEEMLEENYDENSYDWFREISRPRSYWEERRQSWYKEMQDSGSPNDDIQVLLQRRTVSNFLSSDFREKMDRLMQSHKGTQTHLVTNQDDEIDNEALMAFFKEHLQPEKTPRENEIEKTVDEEEETLNEEEEEEEEEEERKQDDKEHEEEQGGESLVSDSYHEVGDYSNQSSSWSYRDNEPGDDFDRVASTSSQQPYQSPSFYHENTRRNSPPINHHSIEMEIIYDMRGHMEQLYQEMSELRKSIKSCMDMQMKMQLHEKKSHDKVAKKGNCCICNETKADSVFYRCGHMCACLKCANELQWKNGKCPICRAKIDDVVRVHVEA 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09208 892 Coils Coil 133 153 - -
Vifa1g09208 892 Coils Coil 681 719 - -
Vifa1g09208 892 ProSiteProfiles Zinc finger RING-type profile. 840 879 IPR001841 -
Vifa1g09208 892 MobiDBLite consensus disorder prediction 59 86 - -
Vifa1g09208 892 MobiDBLite consensus disorder prediction 730 746 - -
Vifa1g09208 892 PANTHER BNAC05G24000D PROTEIN 1 891 - -
Vifa1g09208 892 Coils Coil 799 819 - -
Vifa1g09208 892 MobiDBLite consensus disorder prediction 754 782 - -
Vifa1g09208 892 MobiDBLite consensus disorder prediction 193 215 - -
Vifa1g09208 892 CDD mRING-HC-C3HC5_NEU1 837 888 - -
Vifa1g09208 892 MobiDBLite consensus disorder prediction 671 783 - -
Vifa1g09208 892 SUPERFAMILY RING/U-box 839 884 - -
Vifa1g09208 892 MobiDBLite consensus disorder prediction 686 711 - -
Vifa1g09208 892 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 822 890 IPR013083 -
Vifa1g09208 892 Pfam Zinc finger, C3HC4 type (RING finger) 837 885 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09208 Vifa-Chr1 1456262914 1456266620 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09208 840 888 C3H Transcription Factor Family AT3G06140 38.776 4.21e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09208 - - mtr:25488200 1173.3