Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09207 ATGGCAACAGCAACAATGAAAACATTACCAACACTTTCACTTCTTTTGTGTTTTTTCTCTTCTGTTCTTTCTAGTGAAAATGACATCATCACTAAAAAAGTACTTTTGGAGGTTAAGTCTTCTTTTCTGACTGACCCTGAAAATGTTTTAGGAACTTGGTCGGAAGAAAACACTGATTATTGTACTTGGAGAGGTGTTTCATGTGACTTGTTGCATGTTGTGGTTGGACTCAACTTGTCTGACTCGAAACTCACTGGGTCAGTTTCATCTTCACTCGGCCTTTTACAAAACCTACTCCACCTTGATCTTTCAGCTAATCATCTTGTGGGTCCCATTCCACCTTCTCTCTCAAATCTCACTAAATTAGAATCTTTGCTTCTTTATTCAAACCAACTCGCTGGTCAGATTCCAAACGAGTTGGGTTTGTTAGTGAGTCTCCGAGTTTTGCGAATCGGGGATAATAAACTCACTGGCGAAATTCCATCTTCTTTGGGGAATCTTGTAAACCTTGTTGTCCTTGGTTTAGCTTCATGCAAACTCACCGGTTCGATTCCGCATCAACTTGGTCGACTCACTGAGTTGAACAATTTGATCTTGCAAGACAACGAGTTAACAGGCCCGATTCCATCCGAGTTAGGAAACTGCTCAAGCCTCATCTGCTTCACTGCTTCTGACAACAAACTCAACGGCACAATCCCGAGTCAACTGGGTCAGCTCAGAAGCCTCCAGATTCTCAACCTTGCAAACAATTCCTTAACTGGGGAGATTCCGAGTCAACTCGGTCAATTGAACGAGCTTAATTATCTAAGTTTAACGGAAAACAAGCTCGAGGGTTACATTCCACCGTCTTTATCTCAAATGGGTAGCCTTCAAAATCTTGACTTGTCAAAGAACAAACTCAGTGGAGGAATTCCAGAAGAATTTGGTAACATGCATCGGTTGAAATTCTTAGTTCTTTTCGAAAACCCTTTAAGTGGAAAAATTCCAAAAACTTTATGTTCCAATGCAACAAATTTGGAGCATTTATTGATTTCAATGAGTGAACTTTATGGTGAGATTCCATCTGAATTGAGTCAATGCAAGTCATTGAAGCAAATTGATTTATCCAACAATTTTCTCAATGGAACAATTCCTCTTGAGATTTATGGTTTGGTGAACATAACAGATCTTTTGCTTCACAACAATAGTTTAATTGGTTCGGTTTCATCTTTCATAGGGAACTTAACAAACTTGAAAACACTTGCATTGTATCATAACAAGTTGCATGGTGCTTTGCCTAAGGAGATTGGGATGCTTGGAAAGATGGAGATTTTGTATCTTTATGATAATCAGTTTTCGGGGAATATACCCAATGAGATTGGTAATTGCTCAAATTTGAAAATGGTTGATTTCTTTGGTAACCGTTTTGGTGGAAGAATTCCAATTACGATTGGAAGATTGAAAGAATTGAGTTTTCTTCACATTAGACAGAACGAGCTTGTTGGTGAGATTCCGGCTACGCTTGGGAACTGTCATAAACTGAATGTGCTTGATTTGGCAGATAATAACCTCTCTGGTGGAATTCCTGCGACATTCGGGTACTTGAAAGATTTGCAGCAGTTCATGCTTTACAACAACTCTCTTGAAGGTGGTATTCCTCGTCAAATGGCAAATGTAGCAAACTTGACAAGAGTTAATCTCTCGAAGAACAGATTGAATGGAAGTTTAGCTCCATTGTGCAGCTCTAGAGGTTTTCTTTCTTTTGATGTTACAGGTAATGAATTTGATGGTGAAATTCCTTCAAACTTGGGTAACTCTATGTCACTTAAGAGGCTAAGATTAGGAGGTAACAGGTTTTCTGGTGAAATTCCGAGGACATTGGGAAAAATCGTTGATCTGTCTTTGTTAGATCTCTCGGAGAATTCACTCACAGGGCCGATACCAGGTGAACTATCTCTGTGTAATAAACTGTCCTCTGTTGATTTAAGCAATAACCTTCTTGTTGGACATGTACCGTCGTGGCTTGGTAATTTGCCTAGTTTAGGAAAGCTTAATCTTGCATTTAATCAATTTTCCGGGCCTTTTCCACTAGGCCTATTCAAATTACCGACGTTGTTGGTTCTTTCTTTAAATAACAATTCTCTTAATGGAAGTCTCCCTGATGGTATCGGCGATCTCAAATCGCTTAATGTCCTTAGACTTGATCGTAATAATTTTTCTGGACCAATCCCTCGTGCCATAGGGAAGTTGGGAAATCTTTATGAGCTCAATCTATCCAGAAATGTCTTTTGTAGTGACATACCAAATGAGATTGGAAATCTTCAAAATCTCCAAATTGCTTTGGATTTGAGTAACAATAATCTCTCGGGTCAGCTTCCTTCTTCTCTCGGTACGTTATCAAAATTAGAAGCACTTGATTTGTCTCACAACAAACTCACAGGCGAAGTTCCTCCGAACATTGGTGAAATGATTAGCTTGGATAAGCTTGATATCTCTTATAATGATTTTCAAGGTGCATTGGGTAAGCGATTCTCACGCTGGCCGTATGAGGCTTTTGCAGGGAACTTTCATCTCTGTGGAGCCTCTTTCCGTAGCTGCAACCGCGGTGGTGCTTCCCCAAATAAGCTAGCAGGGTTAAGTGAGACAGCTGTGATCATAATCTCCGCGATTTCAACACTAGCTGCAATTGTGATATTTATTCTTGCAGTGAAAATCTTCTTGAGAAATAGGCAATATTTTTGGAACAAAGATAGCGAATTAGCCGGTGTTTTCTCTTCTTCTACGTCACAAGCAAAGAAACGGCTGTTGTTCCCTGTAAGTACAGCTGGAAAACGAGATTTCAGGTGGGAAGACATCATGGCTGCTACAAACAATTTGAGCGAAGAATTCATAATCGGTTCAGGAGCTTCTGGAACTGTCTACAGAGTTGAATTACCTACTGGCGAAACTGTGGCTGTCAAGAAGATTTCATTGAAAGACGAATATCTGTTGCATAAAAGCTTCATAAGAGAAATAAAGACTTTGGGCAGGATTAAGCATCGACACTTGGTGAAACTGGTTGGTTGTTGTAGCAATAGAAACAAAGGAAATGGTTGTAATCTGTTGATATACGAGTACATGGAAAACGGAAGCGTTTGGGATTGGTTACATGGAAATGCACTAAAGTTAAAGAGAAACCTTGATTGGGAAACAAGGTTCAAAATCGCTTTAGGGTTAGCTCAAGGGATGGAGTATCTTCATCATGATTGCGTGCCAATGCTCATTCACAGGGACATCAAATCCAGCAATATATTGTTAGATTCTAACATGGATGCACACTTGGGAGATTTCGGATTAGCAAAAGCACTCATAGAGAATCATGATACTAATACCGAATCTACTTGTTTTGCAGGTTCTTATGGTTACATAGCTCCAGAGTTTGGATACTCGTTAAAGGCGACAGAGAAAAGCGATGTTTACAGCATGGGAATTGTGCTTATGGAACTTGTGAGCGGCAAAAAGCCAACAGATGAAGCTTTTAGAACAGGTATAGACATGGTGAGATGGGTGGAGAGGCACGTCGACTCGAAAGGGACCGAGCGCGATGAACTAATAGATCCCGAACTAAAACCGCTTTTACCTATTGAAGAGTTTGCAGCATTTCAAGTGCTTGAGATAGCTTTACAATGCACCAAAACTGCACCAATGGATAGACCAACATCGAGGCACGTTTGTGATCTTCTTCAACATGTGTCCAAGAACAAAAAAGTGGAGTTTAAGAAGATGGATTTGGATACTTACAACTGA 3765 0.3997 MATATMKTLPTLSLLLCFFSSVLSSENDIITKKVLLEVKSSFLTDPENVLGTWSEENTDYCTWRGVSCDLLHVVVGLNLSDSKLTGSVSSSLGLLQNLLHLDLSANHLVGPIPPSLSNLTKLESLLLYSNQLAGQIPNELGLLVSLRVLRIGDNKLTGEIPSSLGNLVNLVVLGLASCKLTGSIPHQLGRLTELNNLILQDNELTGPIPSELGNCSSLICFTASDNKLNGTIPSQLGQLRSLQILNLANNSLTGEIPSQLGQLNELNYLSLTENKLEGYIPPSLSQMGSLQNLDLSKNKLSGGIPEEFGNMHRLKFLVLFENPLSGKIPKTLCSNATNLEHLLISMSELYGEIPSELSQCKSLKQIDLSNNFLNGTIPLEIYGLVNITDLLLHNNSLIGSVSSFIGNLTNLKTLALYHNKLHGALPKEIGMLGKMEILYLYDNQFSGNIPNEIGNCSNLKMVDFFGNRFGGRIPITIGRLKELSFLHIRQNELVGEIPATLGNCHKLNVLDLADNNLSGGIPATFGYLKDLQQFMLYNNSLEGGIPRQMANVANLTRVNLSKNRLNGSLAPLCSSRGFLSFDVTGNEFDGEIPSNLGNSMSLKRLRLGGNRFSGEIPRTLGKIVDLSLLDLSENSLTGPIPGELSLCNKLSSVDLSNNLLVGHVPSWLGNLPSLGKLNLAFNQFSGPFPLGLFKLPTLLVLSLNNNSLNGSLPDGIGDLKSLNVLRLDRNNFSGPIPRAIGKLGNLYELNLSRNVFCSDIPNEIGNLQNLQIALDLSNNNLSGQLPSSLGTLSKLEALDLSHNKLTGEVPPNIGEMISLDKLDISYNDFQGALGKRFSRWPYEAFAGNFHLCGASFRSCNRGGASPNKLAGLSETAVIIISAISTLAAIVIFILAVKIFLRNRQYFWNKDSELAGVFSSSTSQAKKRLLFPVSTAGKRDFRWEDIMAATNNLSEEFIIGSGASGTVYRVELPTGETVAVKKISLKDEYLLHKSFIREIKTLGRIKHRHLVKLVGCCSNRNKGNGCNLLIYEYMENGSVWDWLHGNALKLKRNLDWETRFKIALGLAQGMEYLHHDCVPMLIHRDIKSSNILLDSNMDAHLGDFGLAKALIENHDTNTESTCFAGSYGYIAPEFGYSLKATEKSDVYSMGIVLMELVSGKKPTDEAFRTGIDMVRWVERHVDSKGTERDELIDPELKPLLPIEEFAAFQVLEIALQCTKTAPMDRPTSRHVCDLLQHVSKNKKVEFKKMDLDTYN 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09207 1254 ProSitePatterns Protein kinases ATP-binding region signature. 958 981 IPR017441 GO:0005524
Vifa1g09207 1254 Gene3D Ribonuclease Inhibitor 573 862 IPR032675 -
Vifa1g09207 1254 SUPERFAMILY Protein kinase-like (PK-like) 930 1234 IPR011009 -
Vifa1g09207 1254 ProSiteProfiles Protein kinase domain profile. 952 1239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09207 1254 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1080 1092 IPR008271 GO:0004672|GO:0006468
Vifa1g09207 1254 Gene3D Ribonuclease Inhibitor 474 572 IPR032675 -
Vifa1g09207 1254 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 913 1032 - -
Vifa1g09207 1254 SMART serkin_6 952 1239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09207 1254 FunFam Leucine-rich repeat receptor protein kinase EMS1 499 573 - -
Vifa1g09207 1254 Gene3D Phosphorylase Kinase; domain 1 914 1032 - -
Vifa1g09207 1254 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 187 280 - -
Vifa1g09207 1254 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 281 382 - -
Vifa1g09207 1254 SUPERFAMILY L domain-like 280 617 - -
Vifa1g09207 1254 SUPERFAMILY L domain-like 35 329 - -
Vifa1g09207 1254 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 29 186 - -
Vifa1g09207 1254 FunFam Leucine-rich repeat receptor protein kinase EMS1 403 498 - -
Vifa1g09207 1254 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Vifa1g09207 1254 FunFam Leucine-rich repeat receptor-like protein kinase 1033 1251 - -
Vifa1g09207 1254 Gene3D Transferase(Phosphotransferase) domain 1 1033 1253 - -
Vifa1g09207 1254 Gene3D Ribonuclease Inhibitor 179 282 IPR032675 -
Vifa1g09207 1254 Gene3D Ribonuclease Inhibitor 378 473 IPR032675 -
Vifa1g09207 1254 Pfam Leucine rich repeat 266 324 IPR001611 GO:0005515
Vifa1g09207 1254 Pfam Leucine rich repeat 506 565 IPR001611 GO:0005515
Vifa1g09207 1254 Gene3D Ribonuclease Inhibitor 283 377 IPR032675 -
Vifa1g09207 1254 Gene3D Ribonuclease Inhibitor 31 178 IPR032675 -
Vifa1g09207 1254 PANTHER UNNAMED PRODUCT 644 1163 - -
Vifa1g09207 1254 SMART LRR_typ_2 191 215 IPR003591 -
Vifa1g09207 1254 SMART LRR_typ_2 408 431 IPR003591 -
Vifa1g09207 1254 SMART LRR_typ_2 432 456 IPR003591 -
Vifa1g09207 1254 SMART LRR_typ_2 287 310 IPR003591 -
Vifa1g09207 1254 SMART LRR_typ_2 143 167 IPR003591 -
Vifa1g09207 1254 SMART LRR_typ_2 743 767 IPR003591 -
Vifa1g09207 1254 SMART LRR_typ_2 695 719 IPR003591 -
Vifa1g09207 1254 SMART LRR_typ_2 95 119 IPR003591 -
Vifa1g09207 1254 SMART LRR_typ_2 239 263 IPR003591 -
Vifa1g09207 1254 SMART LRR_typ_2 480 504 IPR003591 -
Vifa1g09207 1254 SMART LRR_typ_2 792 816 IPR003591 -
Vifa1g09207 1254 SUPERFAMILY L domain-like 576 834 - -
Vifa1g09207 1254 PRINTS Leucine-rich repeat signature 290 303 - -
Vifa1g09207 1254 PRINTS Leucine-rich repeat signature 792 805 - -
Vifa1g09207 1254 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 574 862 - -
Vifa1g09207 1254 Pfam Protein kinase domain 957 1231 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09207 Vifa-Chr1 1456246582 1456250440 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09207 34 693 Receptor kinase-like Gene Family AT1G17750 33.147 3.87e-97 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa1g09207 Pkinase 7.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09207 - - gmx:100797153 1707.96