Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09202 ATGCGTTGTGGCGTTGTTGTTGTTATCTTGTTCTTTAACGCGTTTTTAGTATGCTGTGTGAGTGGAATCGGCGTAAACTGGGGTACTCAATGTACGCATCTTTTGTCACCTACTACGGTGGTGAGAATGCTGAAAGATAACGGGATTCAGAAGGTGAAGTTGTTTGATGCTGATCCGAATATCTTAGACGCGCTTAAGAAATCTGGTATTCAGGTGTTGACATCAGATAAAATGAAACGCGAGACTAAGCTGGAATTCTCCCCGGAAGAAGAAGATATAGTTGCAAAAATGTTTAGATTGGTTGGAAAAAGATGGCATCTCATTGCTGGAAGGATTCCAAGAAGAAGCGCAGAAGATATTGAAAAATATTGGAACTCAAAGTTTTCTTCTTCAACTGCATAA 402 0.4005 MRCGVVVVILFFNAFLVCCVSGIGVNWGTQCTHLLSPTTVVRMLKDNGIQKVKLFDADPNILDALKKSGIQVLTSDKMKRETKLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPRRSAEDIEKYWNSKFSSSTA 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09202 133 SUPERFAMILY (Trans)glycosidases 23 74 IPR017853 -
Vifa1g09202 133 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 132 IPR017930 -
Vifa1g09202 133 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Vifa1g09202 133 SMART sant 82 130 IPR001005 -
Vifa1g09202 133 Gene3D Glycosidases 23 91 - -
Vifa1g09202 133 SUPERFAMILY Homeodomain-like 85 128 IPR009057 -
Vifa1g09202 133 CDD SANT 85 125 IPR001005 -
Vifa1g09202 133 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 78 129 - -
Vifa1g09202 133 Pfam Glycosyl hydrolases family 17 23 74 IPR000490 GO:0004553|GO:0005975
Vifa1g09202 133 Gene3D - 92 132 - -
Vifa1g09202 133 Pfam Myb-like DNA-binding domain 85 126 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09202 Vifa-Chr1 1455456873 1455457380 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09202 4 73 Glycoside Hydrolase AT4G31140 58.571 8.46e-21 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa1g09202 Glyco_hydro_17 2.8e-07 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09202 K19893 - psat:127094319 119.398