Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09199 ATGTCTAATTCTTTAGTCCAAATTTTGCTTGTTTTAGTTCTTTACATAATTTCAGCCAATTCAACTCAACCTTATGATGAAAACTATGATACTAATGCTGAGTTCACTCTTCAAGTCCCAACATTAGATGAAACAAATTTGGATAATCTCTTATCCTTTGGTTTTTACCGTAAAAGTTGTCCTCAATTTGAGTCCATCTTGCAAAATAAAGTCAAAGAATGGATTAAGAAGGATTACACTTTAGCAGCTAGTCTCCTAAGGTTGCACTTCCATGATTGCTCTATCAGGGGATGTGATGGGTCGATTCTATTGAAACACGAAAGAAGTGAGAGGAATGCAGAAGCAAGCAAGACATTGCGAGGCTATGAAGTAATTGATGATATAAAGGTAGAGGTAGAGAAACAATGTCCTAGGACAGTGTCTTGTGCAGACATTCTCACAACTGCTGCAAGGGATGCAACTGTTGAATTGGGTGGACCATATTGGCCTGTCCCTTATGGAAGAAAAGATGGAACGATATCGATCGACAGTGAAACCGAAATTATTCCAAAGGGTCATGAGAACATCACTTCCTTGATTGAGTTTTTCCAATCCAAAGGCTTGAATGTTTTCGACTTAGTTGTTCTGTCAGGAGCACATACTATTGGAAGGACATCATGTGGCTCTATTCAATATAGGCTATACAACTACAATGACACAGGGAAACCAGACCCATCGATAGATCCGAGATACCTAAACTTCTTGAGAAGAAAATGTCGATGGGCCTCGGAGTATGTTGATCTCGATGCAACAACACCAAAAAGCTTTGATCAAATGTACTATATAAATCTCAAAAAGAAAATGGGATTGTTATCGACCGATCAATTGTTATATTCTGATCAAAGAACTTCTCCATTGGTTTCGGCTATGGCTTCAGCGTCATCGGTTTTCAAGCACCAGTTTGCAGTTTCAATGTCCAAGTTTGGTGTCATTGATGTTCTGACTGGAGAGGATGAAGGAGAAATCAGAACCAACTGCAATTTTGTTAACGATTATTGA 1038 0.3863 MSNSLVQILLVLVLYIISANSTQPYDENYDTNAEFTLQVPTLDETNLDNLLSFGFYRKSCPQFESILQNKVKEWIKKDYTLAASLLRLHFHDCSIRGCDGSILLKHERSERNAEASKTLRGYEVIDDIKVEVEKQCPRTVSCADILTTAARDATVELGGPYWPVPYGRKDGTISIDSETEIIPKGHENITSLIEFFQSKGLNVFDLVVLSGAHTIGRTSCGSIQYRLYNYNDTGKPDPSIDPRYLNFLRRKCRWASEYVDLDATTPKSFDQMYYINLKKKMGLLSTDQLLYSDQRTSPLVSAMASASSVFKHQFAVSMSKFGVIDVLTGEDEGEIRTNCNFVNDY 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09199 345 Gene3D Peroxidase, domain 2 183 321 - -
Vifa1g09199 345 FunFam Peroxidase 54 195 - -
Vifa1g09199 345 PANTHER PEROXIDASE 25-RELATED 15 336 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g09199 345 PRINTS Plant peroxidase signature 260 275 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g09199 345 PRINTS Plant peroxidase signature 158 173 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g09199 345 PRINTS Plant peroxidase signature 276 293 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g09199 345 PRINTS Plant peroxidase signature 60 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g09199 345 PRINTS Plant peroxidase signature 316 329 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g09199 345 PRINTS Plant peroxidase signature 84 104 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g09199 345 PRINTS Plant peroxidase signature 120 133 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g09199 345 PRINTS Plant peroxidase signature 139 149 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g09199 345 PRINTS Plant peroxidase signature 204 216 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g09199 345 FunFam Peroxidase 183 321 - -
Vifa1g09199 345 PRINTS Haem peroxidase superfamily signature 82 96 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g09199 345 PRINTS Haem peroxidase superfamily signature 140 157 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g09199 345 PRINTS Haem peroxidase superfamily signature 205 220 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g09199 345 PRINTS Haem peroxidase superfamily signature 262 277 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g09199 345 PRINTS Haem peroxidase superfamily signature 158 170 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g09199 345 ProSiteProfiles Plant heme peroxidase family profile. 50 343 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g09199 345 Gene3D - 54 343 - -
Vifa1g09199 345 ProSitePatterns Peroxidases proximal heme-ligand signature. 205 215 IPR019793 -
Vifa1g09199 345 CDD secretory_peroxidase 51 342 IPR033905 GO:0004601|GO:0042744
Vifa1g09199 345 Pfam Peroxidase 68 305 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g09199 345 ProSitePatterns Peroxidases active site signature. 82 93 IPR019794 GO:0004601
Vifa1g09199 345 SUPERFAMILY Heme-dependent peroxidases 51 343 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09199 Vifa-Chr1 1454971451 1454972781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09199 47 343 Peroxidase AT1G30870 60.201 3.81e-130 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09199 K00430 - gmx:100798229 557.755