LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g09180	ATGGAAGGGAAAAAAGATGCAGTTTTGTTTTGTGTTTTGGCTTTGTTCTTCATGTGGACTTCAGTAACTGGTTTGCTTTCTTCAAAAGGTGTTAACTATGAAGTTCAAGCTTTGATGGGAATTAAGAACTCTTTGAGTGATCCTCATTCAGCTTTAAATAATTGGGATGCTGAGTCTGTGGATCCTTGCAACTGGGCTATGGTTACTTGTTCTCCTGATCATTTTGTCATTGCACTTGGAATTCCTAGCCAGAATATATCTGGTACTCTCTCATCAACCATAGGTTCCTTACCAAATCTTCAAACTGTGCTTTTGCAGGATAATAATATAACAGGACCAATTCCCTCTGAGATTGGAAGGCTTCAAAAGCTTCAAACACTTGATCTTTCAGACAACTTCTTCACTGATCAGCTTCCAGATTCTCTTTCACATATGAAGGGTCTCCATTATTTGAGGCTAAACAACAACAGTCTTTCTGGACCAATTCCTTCTTCAGTGGCTAACATGTCTCAGCTAGTTTTTCTGGATCTTTCTTTTAATAACTTGAGTGGACCTGTACCTAGATTTAATGCTAAAACATTCAATATTGTAGGAAATCACCAGATATGTGTCACTGGAGTTGAGCAAAACTGTTTTAGAACAACATTAATTCCTTCTGCTATGAATAATAACTCTCAAGATTTACAAGCCTCTAATAGACCAAAAAGTCACAAAGTTGCTTTGGCTTTTGCTTCAAGCCTAAGCTGCATCTGCTTACTTATTCTGGGATTTGGCTTCCTTCTCTGGTGGAGACAAAGATATAACAAACAAATATTCTTTGACACGAATGAACAATATCGTGAGGATATTTGCCTTGGAAACCTGAAGAAGTTCCATTTCAGAGAACTTCAGGTTGCTACAAATAACTTCAGCAGCAACAACTTAGTTGGAAAAGGTGGTTTCGGTAATGTTTACAAAGGTTGTCTTCGAGATGGTACAGTTATAGCTGTAAAAAGGCTTAAAGATGGTAATGCAATTGGCGGTGAAATCCAGTTCCAAACTGAACTAGAAATGATCAGCTTAGCTGTTCATAGAAACCTTCTTCGCCTGTATGGATTTTGTATGACAACTACAGAAAGGCTCTTGGTTTATCCTTATATGTCAAATGGTAGCGTCGCTTCTCGTCTCAAAGGCAAGCCATCTTTGGAGTGGGCAACAAGGAAGAGGATAGCATTAGGAGCAGGAAGAGGGTTATTATATTTACACGAACAGTGTGATCCAAAGATTATTCACAGAGATGTTAAAGCAGCAAATATCTTGCTTGATGATTATTGTGAAGCTGTAGTAGGAGACTTTGGGTTGGCAAAGCTGTTGGACCACAGAGATTCACATGTGACAACAGCAGTGAGAGGAACTGTAGGACACATAGCACCCGAGTACCTATCAACAGGACAATCCTCAGAGAAAACAGATGTATTTGGGTTTGGAATTCTTCTGCTTGAATTGATTTCTGGACAGAGAGCTCTTGAATTTGGAAAAGCTGCAAACCAGAAAGGAGCTATGCTTGATTGGGTGAAGAAAATACATCAAGAGAAGAAGATTGACGTGTTGGTTGACAAGGACTTGAGAAACAACTATGACAGGATAGAGCTAGATGAAATAGTTCAAGTTGCTCTTCTATGTACTCAGTACCTTCCAAGCCACAGACCAAAAATGTCAGAAGTAGTTAGAATGCTTGAGGGAGATGGACTTGCTGACAAATGGGAAGCTTCACAGAGAGCTGAATCAACAAGAAGTAGGGGAAATGAACTCTCGTCTTCAGAGCGTTATTCTGATCTAACCGACGATTCTTCATTGCTTGCACAAGCAATGGAACTTTCTGGACCAAGATAA	1872	0.3942	MEGKKDAVLFCVLALFFMWTSVTGLLSSKGVNYEVQALMGIKNSLSDPHSALNNWDAESVDPCNWAMVTCSPDHFVIALGIPSQNISGTLSSTIGSLPNLQTVLLQDNNITGPIPSEIGRLQKLQTLDLSDNFFTDQLPDSLSHMKGLHYLRLNNNSLSGPIPSSVANMSQLVFLDLSFNNLSGPVPRFNAKTFNIVGNHQICVTGVEQNCFRTTLIPSAMNNNSQDLQASNRPKSHKVALAFASSLSCICLLILGFGFLLWWRQRYNKQIFFDTNEQYREDICLGNLKKFHFRELQVATNNFSSNNLVGKGGFGNVYKGCLRDGTVIAVKRLKDGNAIGGEIQFQTELEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVASRLKGKPSLEWATRKRIALGAGRGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKAANQKGAMLDWVKKIHQEKKIDVLVDKDLRNNYDRIELDEIVQVALLCTQYLPSHRPKMSEVVRMLEGDGLADKWEASQRAESTRSRGNELSSSERYSDLTDDSSLLAQAMELSGPR	623

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g09180	623	ProSiteProfiles	Protein kinase domain profile.	303	558	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g09180	623	SMART	serkin_6	303	558	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g09180	623	Pfam	Protein kinase domain	305	570	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g09180	623	MobiDBLite	consensus disorder prediction	590	614	-	-
	Vifa1g09180	623	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	31	213	-	-
	Vifa1g09180	623	FunFam	Somatic embryogenesis receptor kinase 1	272	379	-	-
	Vifa1g09180	623	ProSitePatterns	Protein kinases ATP-binding region signature.	309	331	IPR017441	GO:0005524
	Vifa1g09180	623	SUPERFAMILY	L domain-like	33	196	-	-
	Vifa1g09180	623	MobiDBLite	consensus disorder prediction	582	623	-	-
	Vifa1g09180	623	FunFam	Somatic embryogenesis receptor-like kinase 1	380	592	-	-
	Vifa1g09180	623	SUPERFAMILY	Protein kinase-like (PK-like)	283	573	IPR011009	-
	Vifa1g09180	623	Pfam	Leucine rich repeat N-terminal domain	32	71	IPR013210	-
	Vifa1g09180	623	Gene3D	Transferase(Phosphotransferase) domain 1	380	592	-	-
	Vifa1g09180	623	Gene3D	Phosphorylase Kinase; domain 1	272	379	-	-
	Vifa1g09180	623	Pfam	Leucine rich repeat	123	182	IPR001611	GO:0005515
	Vifa1g09180	623	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	13	583	-	-
	Vifa1g09180	623	Gene3D	Ribonuclease Inhibitor	31	213	IPR032675	-
	Vifa1g09180	623	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	422	434	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g09180	Vifa-Chr1	1452387427	1452390629	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g09180	9	623	Receptor kinase-like Gene Family	AT5G16000	71.795	0.0	920

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Vifa1g09180		Pkinase	1.4e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g09180	-		-	gmx:100804283	1100.89