Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09161 ATGGCTGAAATTCACACACAAACTCCAACAATCAGTCCTACACCAAGCAAACCATGTAACAATCCTCCACAACAACATAGTCTCAACTCAATGGTTCTTATAGCAGCTATAGTATGTGCTTTACTATGTGCTCTTGGCCTCAACACAATGCTACAATGTGTGTTCCAATGCGCGAACCGCGTTCTTACCGAACCTCTTCAATGGATCGCTTCTCGAAGGCGCAATTCCGGACTCAAGAAGAAAGATAGAGTTGCTTTGCCAACATCAGTTTATAATACTCATTCAGGTGGATCAACTCCTCAAACTTTGGATTCTAATTGTGCTATTTGCTTAGCTGAGTTTTGTGATGGTGATAATATGAAGATGTTACCAAAGTGTAATCATCGTTTTCATGTTGTTTGTATTGATAAGTGGTTGCTTTCTCATTCTTCTTGTCCTACTTGTAGGAACTTGATCAAGTCTCATGATTCTGTTCACTGCTTAAGCATTGTTATATCATAG 501 0.3932 MAEIHTQTPTISPTPSKPCNNPPQQHSLNSMVLIAAIVCALLCALGLNTMLQCVFQCANRVLTEPLQWIASRRRNSGLKKKDRVALPTSVYNTHSGGSTPQTLDSNCAICLAEFCDGDNMKMLPKCNHRFHVVCIDKWLLSHSSCPTCRNLIKSHDSVHCLSIVIS 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09161 166 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g09161 166 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Vifa1g09161 166 Pfam Ring finger domain 106 149 IPR001841 -
Vifa1g09161 166 SMART ring_2 107 148 IPR001841 -
Vifa1g09161 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 154 IPR013083 -
Vifa1g09161 166 PANTHER RING-H2 FINGER PROTEIN ATL78 11 153 IPR044602 GO:0016567|GO:0016740
Vifa1g09161 166 SUPERFAMILY RING/U-box 100 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09161 Vifa-Chr1 1449819531 1449820031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09161 11 149 C3H Transcription Factor Family AT3G10910 38.065 1.85e-29 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09161 - - psat:127138077 325.865