Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09159 ATGAACGATCACAAGGAGTGTGCAATTCACCAAAACGATAAACCTGTTCGAGTTTATGCCGATGGAATTTACGATCTCTTTCACTTCGGTCATGCCCGTTCTCTTGAACAAGCCAAGAAATCGTTTCCAAACACTTATCTCCTTGTTGGATGCTGCAATGATGAGACCACTCATAAGTATAAGGGAAAAACTGTTATGACTGAGGCCGAACGCTACGAGTCTCTTCGCCACTGCAAGTGGGTTGACGAAGTTATTCCAGATGTGCCATGGGTAATCAATCAGGAGTTCATTGACAAGCATCAAATTGACTACGTGGCTCATGATTCTCTTCCTTATGCTGATACAAGTGGAGCTGGAAGGGATGTCTATGAATTTGTTAAGGCTATTGGAAAATTTAAGGAAACACAGCGAACTGAAGGAATTTCTACTTCTGATATCATAATGAGAATCATCAAAGATTATAACCAGTATGTAATGCGTAATTTGGATCGTGGTTATTCAAGAAAAGACCTAGGTGTTAGCTATGTCAAGGAGAAAAGATTGAGAATGAACATGGGACTTAAAAAGTTGCAGGAGAGAGTGAAGAAACAGCAAGAGACTGTGGGAAAGAAGATAGGAACAGTGAAAAAAATTGCTGGCATGAACCGTACTGAATGGGTCGAAAATGCTGATCGATTAGTTGCTGGATTCCTCGAGATGTTTGAAGAAGGATGCCACAAAATGGGAACGGCAATCAGAGACAGAATTCAAGAACAGCTGAAGGCACAACAGCTAAGATCTCTTCTATATGACGAGTGGGATGATGATGTTGACGAAGAATTCTATGAAGATGAATCTGTGGAATTCTACAGTGACTAA 858 0.4068 MNDHKECAIHQNDKPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKYKGKTVMTEAERYESLRHCKWVDEVIPDVPWVINQEFIDKHQIDYVAHDSLPYADTSGAGRDVYEFVKAIGKFKETQRTEGISTSDIIMRIIKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLRMNMGLKKLQERVKKQQETVGKKIGTVKKIAGMNRTEWVENADRLVAGFLEMFEEGCHKMGTAIRDRIQEQLKAQQLRSLLYDEWDDDVDEEFYEDESVEFYSD 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09159 285 SUPERFAMILY Nucleotidylyl transferase 17 149 - -
Vifa1g09159 285 PANTHER CYTIDYLYLTRANSFERASE 10 279 IPR045049 GO:0004105|GO:0006657
Vifa1g09159 285 CDD CCT 14 165 IPR041723 -
Vifa1g09159 285 Gene3D HUPs 2 236 IPR014729 -
Vifa1g09159 285 NCBIfam cytidyltransferase-like domain 17 84 IPR004821 GO:0003824|GO:0009058
Vifa1g09159 285 FunFam Choline-phosphate cytidylyltransferase 2 1 236 - -
Vifa1g09159 285 Pfam Cytidylyltransferase-like 19 148 IPR004821 GO:0003824|GO:0009058
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09159 Vifa-Chr1 1449353531 1449355932 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09159 42 277 Acyl Lipid Metabolism Gene Families AT2G32260 80.169 7.00e-139 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09159 K00968 - gmx:100791886 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09159 1 1449353531 1449355932 Vifa1g09159 1 1449353531 1449355932 ECH