Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09157 ATGAAGATCATTGCGGCATATTTGTTGGCCGTTTTGGGAGGTAACACGGCCCCTTCAGCAGTTGATGTCAAACGCATCCTAGGCTCAGTTGGAGTTGAGGGTGAGGATGAGCAGATAGAGTTGCTGTTGAGGGAAGTCAAGGGCAAAGATTTTGCCGAACTAATTGCCAGTGGAAGAGAGAAATTGGCTTCAGTTCCTTCTGGTGGAGGAGCTATTGCTGTTTCTGCTGCATCTGGTGGTGGTGCTGCGGCTGCTGCTGCACCTGCGGCTGAAGCAAAGGAAGAAAAGAAGGTTGAAGAAAAAGAAGAGTCTGATGATGATATGGGCTTTAGTTTGTTTGACTAG 345 0.4812 MKIIAAYLLAVLGGNTAPSAVDVKRILGSVGVEGEDEQIELLLREVKGKDFAELIASGREKLASVPSGGGAIAVSAASGGGAAAAAAPAAEAKEEKKVEEKEESDDDMGFSLFD 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09157 114 Hamap 50S ribosomal protein L12 [rpl12]. 2 114 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vifa1g09157 114 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 114 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vifa1g09157 114 Pfam 60s Acidic ribosomal protein 18 113 - -
Vifa1g09157 114 Gene3D - 1 59 IPR038716 -
Vifa1g09157 114 MobiDBLite consensus disorder prediction 85 114 - -
Vifa1g09157 114 FunFam 60S acidic ribosomal protein P2 1 59 - -
Vifa1g09157 114 CDD Ribosomal_P2 1 114 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vifa1g09157 114 MobiDBLite consensus disorder prediction 90 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09157 Vifa-Chr1 1449248899 1449249782 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09157 1 70 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 75.714 1.22e-32 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09157 K02943 - csav:115697224 124.405