Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09144 ATGGTGAAATTTCTGAAGCCGAACAAAGCTGTGATCGTCCTTCAGGGTCGATATGCAGGGAAGAAAGCTGTGATCGTGAAGAACTTTGACGACGGAACCCGTGAACGTGCTTATGGTCATGCTTTGGTGGCTGGGATCAAGAAATATCCCAGCAAGGTTATAAAAAAGGATTCCGCAAAGAAAACCGCCAAGAAGTCTCGTGTGAAGGCGTTTGTGAAGCTTGTTAACTACCAGCATCTCATGCCTACCCGTTACACTTTGGATGTTGATCTTAAGGAGGTGGTTACCAATGACGCGCTCTTGAGTAAGGACAAGAAGGTTACTGCTTTGAAGGAGGCCAAGAAGAGGTTTGAGGAGAGGTTCAAGACCGGGAAGAACAGGTGGTTCTTTACCAAGCTCAGGTTTTGA 408 0.4657 MVKFLKPNKAVIVLQGRYAGKKAVIVKNFDDGTRERAYGHALVAGIKKYPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKEVVTNDALLSKDKKVTALKEAKKRFEERFKTGKNRWFFTKLRF 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09144 135 SMART kow_9 4 31 IPR005824 -
Vifa1g09144 135 Gene3D - 1 135 IPR038655 -
Vifa1g09144 135 PANTHER 60S RIBOSOMAL PROTEIN L27 1 135 IPR001141 GO:0003735|GO:0005840|GO:0006412
Vifa1g09144 135 SUPERFAMILY Translation proteins SH3-like domain 2 135 IPR008991 -
Vifa1g09144 135 Pfam KOW motif 7 32 IPR005824 -
Vifa1g09144 135 ProSitePatterns Ribosomal protein L27e signature. 124 135 IPR018262 GO:0003735|GO:0005840|GO:0006412
Vifa1g09144 135 FunFam 60S ribosomal protein L27 1 135 - -
Vifa1g09144 135 CDD KOW_RPL27 6 88 IPR041991 -
Vifa1g09144 135 Pfam Ribosomal L27e protein family 52 135 IPR001141 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09144 Vifa-Chr1 1447833448 1447833855 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09144 1 135 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 86.667 6.12e-83 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09144 K02901 - fve:101305387 229.565