Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09141 ATGGAGATGAGCTGCCCGTCGAATGTTAATAGAGATGTCCCTACGTGTTCTACTAGCGCAGTTAATATTTCACACTCACACCAGAGTTTTGTGCAACAGCCTGCTTTTGTGAGTGGATGGATGTATGTGAATGAAAATGGACAAATGTGTGGTCCATATATTAAGGAGCAATTATATGGGGGGCTAACTACAGGTTTCTTGCCGTTTGAGCTTCCTGTGTATCCTGTAATCAATGGCACAATAATGAACCCTGTACCATTGAATTATTTCCAACAGTATCCGGACCATGTTTCCACCGGGTTTGTTTACATGGGTATGAATTTCGCAGACACAATGATGTCTACTAATGGCTCCTCTTCTTCTCAGGATATGACAATATATGGGCAAGATAGATCTTTTGAGCCTGCCGCTCTTATGGCTGTTAACGCTGATTCAGAGTCTGTTTCACAGTTAAATGTCAATGACTGCACTAAGGAATCCAATCACTTGAATTTGAATTCGGAGGCTTTCAGGAGGATTATTTCTTGTCAGATGTCGGGAGGAGAATGTTGTTGGCTTTATGAGGATAAAAAGGGTATGAAACATGGGCCGCATTCCATTTCAGAATTGATTTCCTGGCACCACCATGGATATCTTGAAGATTCAACAGTCATCTCCCATTTTGACAATAAGTATGGAAACTTTGTGTTGTTGGCTGCTGCAAATGTGTTGAAAGGAGATATATCTGGAACCATATGTGGATCAGATTCCAAAAGCAATGGAGTCGGTGATGTGATGAACTTAAATTTTGAAATATCTGAAGACATTTCTTCCCAATTGCACATGGGTGTTATGAAAGCTGCCCGAAGAGTTGTGCTAGATGGTATTATTGGCAATATCATTTCAGGATTTGTTACTGAAAAGAAATGCAAGAACCAAAAGATTGAGTCTTCTGATCGAACTTCTGAAACTTGCACATTGGACAGTAAAATGATGAATAATGGTACTTCTATTCCTCCTAGTGAGCCTGCACCTTCCCATTTTTTGGATGACCAGGCTTGTCATGAAATTTCCAGACTGTCTTCAACGAGTGTTAAGACAGTTGGAAGCATTGAAAATTTTTGGTGCTCATATTCTGTTGTTCGTAAAGCAATTGTTGATTATTGCTTGCTAGTCACGTGGAATGCAGTGTTTTTTGACACGCTAACAGAGTACTTAATTTCCTGGAGGAAAAAGAAATATTGGTCTCATCCTAAGCCTCCATCAACTTTTATTGAATCTAAAGATTATGTTGAAAAGATTAAATCAAAAGCTTTGGTTCTCAGGCCAGGTTCCTCTATATGCAATGATGATGCTGATATGCAGTCTGGCGTGATGACGACAGAAAGAGATTGTCATCCTGAGTTACTTATATCTGCTAATAACCTCAAAAGCCGAAACATAGCCGGAGCTCAAAGAGTTTCATGCAGTTATCATAATTCTAAAGTTTTGACATGCATTCTTGAATGTGTGGAGAACGATCTTCACTTCTCTGCAAAGGTGTCTCTAGCTGATTATGTTCGAAGTGTTGTTGAAAAGGAAGTAAACCAATTAATTCCTTCCCTAGAAAAAGATAAATTCAGTGAGGTTGATGATAGTAACTGCCATATCTCAGAGATGCTTACCAGTAAAACATCAGCTAAAGAAATTCTAAATGACAAGACTGTCGATCCTGTGAAAAATAGAGACTCAATTTGCATGTCTTCACCTGGAAACCAAATGTCTAATGTTTTCTCAAAAGCATTTCAAGAACTGTGTGGACATTTAAATGATGTGGTTGACGAAGAGGAGGTTGGTGACATGCCACCTGGATTTGAAAAAAATTCTCAAATAATATTCCCTCACTACAGCTCAAAATTCCGCCCTTCAAGAATAGTTGAATGTAATCCCAAGATTACAGAGTATGTTACTGCTGCACTGTGCAGACAGAAGCTGCATGATGAAGTCCTAGAGAAGTGGAAGTTCTCGATTCTTGATTCTACGATTAAACAGGTTCTTATGTCATCATGTACCATAAAGAAGAATTTTCAGTCTCGTGGTCATGAGAGGAAGTCATTTGGTGCAATTAAGGAACAGTTGAATGGTGTTACTTCTGGACTGGGAAAAGGGAAGGAAGGCTCAAAAAGTTCTGGAGTTCCTTTGTTGGATGGAAATACATATCATCGTAAGAAGCTACCACGGAAAGAGTTTTGCTCCTTTCAGCCTGTTGTAGAAGATAATTTAGGGCCAGGGAAGAAGCCTCTGGCTAACTTACAGAAACATGTTTCTGGAGATGTGAATGAGAGTGCCAAAGTTAAAATAACTGCTATTAAACATGGAAAGACTAAGATGATTAAAGGGAAGAAGGATGCATCTTCTAAGAGCGGGTCTTCTTTCAATGTCGACAATAGCTCACCCAATGATCAATTATCCTTGAAGAATAAAACTAGCCAGAAAGTAGTGAAGTTTGCGCATACAGTTCAAAATGGTGTTATGGATGTCATGAAGTTCAATGAAAAGAGGTCATGGGCATCCTCTAAGAGCAGGTCTTCTATCAATGTCGATAAAAGCATACCCAGTGATCACTTATCCTTGAAGAACAAAACTAGCCAGAAAGTAGTAAAGTTTGCGCATACAGTTCAAAATGGTGTTACGGATATTATGAAGTTTAACGAAAACAGGCTATCGACATCAACTGATAATATTGTTGGTATGAAAGTAGCTAAAAGAAATAACTCTGATGTCACCATTCACAGGAAGACCACTGGTCATATATCTATAGAGAAACTAAGTGTGACAAATAAAGTGTCAAAACCAAAAAGGAAGCATCAAACAGATGTTGTTACATCCTCACTTCCTGCTAAGGTTTTGAAAATTTCAAATAGGGGGTCTAGTCTGAAAGCTAGCAAACAAGTAACTGAGGCACAGAAGGAATCTGCCGTATCCAAGTCATTGGATTTATGTCCTAAATCTAATGGTTGTGCTAGGGCTTCTATTAATGGGTGGGAATGGCATAAATGGTCACTAAGTGCCAGTCCTGCGTGTAGAGCACGTGTCAGGGGTCGTCTTCCACGTTTACAAAACAGGCGCAGAAATTCTGAAAACATTTCATCCCAGGTGTCAAATGGCAAGGGTCTTTCAGCAAGAACCAATAGGGTGAAATTGCGCAACCTTCTTGCTGCAGCTGAGGGTGCAGATCTTCTGAAAGTGCCTCAATTGAAGGCACGAAAAAAGCGATTATGTTTTCAAAGGAGCAAGATACACGACTGGGGTCTTGTTGCCTTAGAGCCAATAGAAGCAGAGGACTTTGTGATTGAATATATTGGAGAATTAATTCGTCCTCGGATATCGGATATACGTGAGCTTCAATATGAGAAGATGGGAATTGGAAGCAGTTACCTTTTCAGAATTGATGATGGTCATGTGGTTGATGCTACAAAGAAAGGCGGGATTGCAAGATTTATCAACCATTCTTGTGAGCCCAACTGTTACACAAAGGTTATATCTTTTGAGGGTCAAAAAAAGATTTTTATATATGCAAAGCGGCATATAAATGCCGGTGAAGAAATTACATACAATTATAAGTTTCCCTTGGAGGAGAAAAAGATTCCCTGCAACTGTGGTTCCAAAAAGTGTCGTAGATCATTAAATTAA 3651 0.3928 MEMSCPSNVNRDVPTCSTSAVNISHSHQSFVQQPAFVSGWMYVNENGQMCGPYIKEQLYGGLTTGFLPFELPVYPVINGTIMNPVPLNYFQQYPDHVSTGFVYMGMNFADTMMSTNGSSSSQDMTIYGQDRSFEPAALMAVNADSESVSQLNVNDCTKESNHLNLNSEAFRRIISCQMSGGECCWLYEDKKGMKHGPHSISELISWHHHGYLEDSTVISHFDNKYGNFVLLAAANVLKGDISGTICGSDSKSNGVGDVMNLNFEISEDISSQLHMGVMKAARRVVLDGIIGNIISGFVTEKKCKNQKIESSDRTSETCTLDSKMMNNGTSIPPSEPAPSHFLDDQACHEISRLSSTSVKTVGSIENFWCSYSVVRKAIVDYCLLVTWNAVFFDTLTEYLISWRKKKYWSHPKPPSTFIESKDYVEKIKSKALVLRPGSSICNDDADMQSGVMTTERDCHPELLISANNLKSRNIAGAQRVSCSYHNSKVLTCILECVENDLHFSAKVSLADYVRSVVEKEVNQLIPSLEKDKFSEVDDSNCHISEMLTSKTSAKEILNDKTVDPVKNRDSICMSSPGNQMSNVFSKAFQELCGHLNDVVDEEEVGDMPPGFEKNSQIIFPHYSSKFRPSRIVECNPKITEYVTAALCRQKLHDEVLEKWKFSILDSTIKQVLMSSCTIKKNFQSRGHERKSFGAIKEQLNGVTSGLGKGKEGSKSSGVPLLDGNTYHRKKLPRKEFCSFQPVVEDNLGPGKKPLANLQKHVSGDVNESAKVKITAIKHGKTKMIKGKKDASSKSGSSFNVDNSSPNDQLSLKNKTSQKVVKFAHTVQNGVMDVMKFNEKRSWASSKSRSSINVDKSIPSDHLSLKNKTSQKVVKFAHTVQNGVTDIMKFNENRLSTSTDNIVGMKVAKRNNSDVTIHRKTTGHISIEKLSVTNKVSKPKRKHQTDVVTSSLPAKVLKISNRGSSLKASKQVTEAQKESAVSKSLDLCPKSNGCARASINGWEWHKWSLSASPACRARVRGRLPRLQNRRRNSENISSQVSNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLCFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRPRISDIRELQYEKMGIGSSYLFRIDDGHVVDATKKGGIARFINHSCEPNCYTKVISFEGQKKIFIYAKRHINAGEEITYNYKFPLEEKKIPCNCGSKKCRRSLN 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09141 1216 CDD SET_SETD1 1065 1212 IPR037841 GO:0042800|GO:0048188
Vifa1g09141 1216 Pfam SET domain 1089 1193 IPR001214 GO:0005515
Vifa1g09141 1216 SMART set_7 1077 1200 IPR001214 GO:0005515
Vifa1g09141 1216 MobiDBLite consensus disorder prediction 780 813 - -
Vifa1g09141 1216 MobiDBLite consensus disorder prediction 703 725 - -
Vifa1g09141 1216 SMART PostSET_3 1200 1216 IPR003616 -
Vifa1g09141 1216 SUPERFAMILY SET domain 1073 1212 IPR046341 -
Vifa1g09141 1216 ProSiteProfiles SET domain profile. 1077 1194 IPR001214 GO:0005515
Vifa1g09141 1216 ProSiteProfiles Post-SET domain profile. 1200 1216 IPR003616 -
Vifa1g09141 1216 MobiDBLite consensus disorder prediction 790 813 - -
Vifa1g09141 1216 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 3 1216 IPR044570 GO:0042800|GO:0051568
Vifa1g09141 1216 Gene3D - 174 244 IPR035445 -
Vifa1g09141 1216 SUPERFAMILY GYF domain 178 233 IPR035445 -
Vifa1g09141 1216 ProSiteProfiles GYF domain profile. 182 232 IPR003169 GO:0005515
Vifa1g09141 1216 Gene3D SET domain 916 1216 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09141 Vifa-Chr1 1446749981 1446757505 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09141 1068 1216 C2H2 Transcription Factor Family AT2G23740 36.257 1.17e-15 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa1g09141 SET 4.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09141 - - psat:127137952 1528.84