Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09139 ATGGAGATGAGCTGCCCGTCGAATGTTAATAGAGATGTCCCTACGTGTTCTACTAGCGCAGTTAATATTTCACACTCACACCAGAGTTTTGTGCAACAGCCTGCTTTTGTGAGTGGATGGATGTATGTGAATGAAAATGGACAAATGTGTGGTCCATATATTAAGGAGCAATTATATGGGGGGCTAACTACAGGTTTCTTGCCGTTTGAGCTTCCTGTGTATCCTGTAATCAATGGCACAATAATGAACCCTGTACCATTGAATTATTTCCAACAGTATCCGGACCATGTTTCCACCGGGTTTGTTTACATGGGTATGAATTTCGCAGACACAATGATGTCTACTAATGGCTCCTCTTCTTCTCAGGATATGACAATATATGGGCAAGATAGATCTTTTGAGCCTGCCGCTCTTATGGCTGTTAACGCTGATTCAGAGTCTGTTTCACAGTTAAATGTCAATGACTGCACTAAGGAATCCAATCACTTGAATTTGAATTCGGAGGCTTTCAGGAGGATTATTTCTTGTCAGATGTCGGGAGGAGAATGTTGTTGGCTTTATGAGGATAAAAAGGGTATGAAACATGGGCCGCATTCCATTTCAGAATTGATTTCCTGGCACCACCATGGATATCTTGAAGATTCAACAGTCATCTCCCATTTTGACAATAAGTATGGAAACTTTGTGTTGTTGGCTGCTGCAAATGTGTTGAAAGGAGATATATCTGGAACCATATGTGGATCAGATTCCAAAAGCAATGGAGTCGGTGATGTGATGAACTTAAATTTTGAAATATCTGAAGACATTTCTTCCCAATTGCACATGGGTGTTATGAAAGCTGCCCGAAGAGTTGTGCTAGATGGTATTATTGGCAATATCATTTCAGGATTTGTTACTGAAAAGAAATGCAAGAACCAAAAGATTGAGTCTTCTGATCGAACTTCTGAAACTTGCACATTGGACAGTAAAATGATGAATAATGGTACTTCTATTCCTCCTAGTGAGCCTGCACCTTCCCATTTTTTGGATGACCAGGCTTGTCATGAAATTTCCAGACTGTCTTCAACGAGTGTTAAGACAGTTGGAAGCATTGAAAATTTTTGGTGCTCATATTCTGTTGTTCGTAAAGCAATTGTTGATTATTGCTTGCTAGTCACGTGGAATGCAGTGTTTTTTGACACGCTAACAGAGTACTTAATTTCCTGGAGGAAAAAGAAATATTGGTCTCATCCTAAGCCTCCATCAACTTTTATTGAATCTAAAGATTATGTTGAAAAGATTAAATCAAAAGCTTTGGTTCTCAGGCCAGGTTCCTCTATATGCAATGATGATGCTGATATGCAGTCTGGCGTGATGACGACAGAAAGAGATTGTCATCCTGAGTTACTTATATCTGCTAATAACCTCAAAAGCCGAAACATAGCCGGAGCTCAAAGAGTTTCATGCAGTTATCATAATTCTAAAGTTTTGACATGCATTCTTGAATGTGTGGAGAACGATCTTCACTTCTCTGCAAAGGTGTCTCTAGCTGATTATGTTCGAAGTGTTGTTGAAAAGGAAGTAAACCAATTAATTCCTTCCCTAGAAAAAGATAAATTCAGTGAGTTGCAGGTTGATGATAGTAACTGCCATATCTCAGAGATGCTTACCAGTAAAACATCAGCTAAAGAAATTCTAAATGACAAGACTGTCGATCCTGTGAAAAATAGAGACTCAATTTGCATGTCTTCACCTGGAAACCAAATGTCTAATGTTTTCTCAAAAGCATTTCAAGAACTGTGTGGACATTTAAATGATGTGGTTGACGAAGAGGAGGTTGGTGACATGCCACCTGGATTTGAAAAAAATTCTCAAATAATATTCCCTCACTACAGCTCAAAATTCCGCCCTTCAAGAATAGTTGAATGTAATCCCAAGATTACAGAGTATGTTACTGCTGCACTGTGCAGACAGAAGCTGCATGATGAAGTCCTAGAGAAGTGGAAGTTCTCGATTCTTGATTCTACGATTAAACAGGTTCTTATGTCATCATGTACCATAAAGAAGAATTTTCAGTCTCGTGGTCATGAGAAGAGGAAGTCATTTGGTGCAATTAAGGAACAGTTGAATGGTGTTACTTCTGGACTGGGAAAAGGGAAGGAAGGCTCAAAAAGTTCTGGAGTTCCTTTGTTGGATGGAAATACATATCATCGTAAGAAGCTACCACGGAAAGAGTTTTGCTCCTTTCAGCCTGTTGTAGAAGATAATTTAGGGCCAGGGAAGAAGCCTCTGGCTAACTTACAGAAACATGTTTCTGGAGATGTGAATGAGAGTGCCAAAGTTAAAATAACTGCTATTAAACATGGAAAGACTAAGATGATTAAAGGGAAGAAGGATGCATCTTCTAAGAGCGGGTCTTCTTTCAATGTCGACAATAGCTCACCCAATGATCAATTATCCTTGAAGAATAAAACTAGCCAGAAAGTAGTGAAGTTTGCGCATACAGTTCAAAATGGTGTTATGGATGTCATGAAGTTCAATGAAAAGAGGTCATGGGCATCCTCTAAGAGCAGGTCTTCTATCAATGTCGATAAAAGCATACCCAGTGATCACTTATCCTTGAAGAACAAAACTAGCCAGAAAGTAGTAAAGTTTGCGCATACAGTTCAAAATGGTGTTACGGATATTATGAAGTTTAACGAAAACAGGCTATCGACATCAACTGATAATATTGTTGGTATGAAAGTAGCTAAAAGAAATAACTCTGATGTCACCATTCACAGGAAGACCACTGGTCATATATCTATAGAGAAACTAAGTGTGACAAATAAAGTGTCAAAACCAAAAAGGAAGCATCAAACAGATGTTGTTACATCCTCACTTCCTGCTAAGGTTTTGAAAATTTCAAATAGGGGGTCTAGTCTGAAAGCTAGCAAACAAGTAACTGAGGCACAGAAGGAATCTGCCGTATCCAAGTCATTGGATTTATGTCCTAAATCTAATGGTTGTGCTAGGGCTTCTATTAATGGGTGGGAATGGCATAAATGGTCACTAAGTGCCAGTCCTGCGTGTAGAGCACGTGTCAGGGGTCGTCTTCCACGTTTACAAAACAGGCGCAGAAATTCTGAAAACATTTCATCCCAGGTGTCAAATGGCAAGGGTCTTTCAGCAAGAACCAATAGGGTGAAATTGCGCAACCTTCTTGCTGCAGCTGAGGGTGCAGATCTTCTGAAAGTGCCTCAATTGAAGGCACGAAAAAAGCGATTATGTTTTCAAAGGAGCAAGATACACGACTGGGGTCTTGTTGCCTTAGAGCCAATAGAAGCAGAGGACTTTGTGATTGAATATATTGGAGAATTAATTCGTCCTCGGATATCGGATATACGTGAGCTTCAATATGAGAAGATGGGAATTGGAAGCAGTTACCTTTTCAGAATTGATGATGGTCATGTGGTTGATGCTACAAAGAAAGGCGGGATTGCAAGATTTATCAACCATTCTTGTGAGCCCAACTGTTACACAAAGGTTATATCTTTTGAGGGTCAAAAAAAGATTTTTATATATGCAAAGCGGCATATAAATGCCGGTGAAGAAATTACATACAATTATAAGTTTCCCTTGGAGGAGAAAAAGATTCCCTGCAACTGTGGTTCCAAAAAGTGTCGTAGATCATTAAATTAA 3660 0.3929 MEMSCPSNVNRDVPTCSTSAVNISHSHQSFVQQPAFVSGWMYVNENGQMCGPYIKEQLYGGLTTGFLPFELPVYPVINGTIMNPVPLNYFQQYPDHVSTGFVYMGMNFADTMMSTNGSSSSQDMTIYGQDRSFEPAALMAVNADSESVSQLNVNDCTKESNHLNLNSEAFRRIISCQMSGGECCWLYEDKKGMKHGPHSISELISWHHHGYLEDSTVISHFDNKYGNFVLLAAANVLKGDISGTICGSDSKSNGVGDVMNLNFEISEDISSQLHMGVMKAARRVVLDGIIGNIISGFVTEKKCKNQKIESSDRTSETCTLDSKMMNNGTSIPPSEPAPSHFLDDQACHEISRLSSTSVKTVGSIENFWCSYSVVRKAIVDYCLLVTWNAVFFDTLTEYLISWRKKKYWSHPKPPSTFIESKDYVEKIKSKALVLRPGSSICNDDADMQSGVMTTERDCHPELLISANNLKSRNIAGAQRVSCSYHNSKVLTCILECVENDLHFSAKVSLADYVRSVVEKEVNQLIPSLEKDKFSELQVDDSNCHISEMLTSKTSAKEILNDKTVDPVKNRDSICMSSPGNQMSNVFSKAFQELCGHLNDVVDEEEVGDMPPGFEKNSQIIFPHYSSKFRPSRIVECNPKITEYVTAALCRQKLHDEVLEKWKFSILDSTIKQVLMSSCTIKKNFQSRGHEKRKSFGAIKEQLNGVTSGLGKGKEGSKSSGVPLLDGNTYHRKKLPRKEFCSFQPVVEDNLGPGKKPLANLQKHVSGDVNESAKVKITAIKHGKTKMIKGKKDASSKSGSSFNVDNSSPNDQLSLKNKTSQKVVKFAHTVQNGVMDVMKFNEKRSWASSKSRSSINVDKSIPSDHLSLKNKTSQKVVKFAHTVQNGVTDIMKFNENRLSTSTDNIVGMKVAKRNNSDVTIHRKTTGHISIEKLSVTNKVSKPKRKHQTDVVTSSLPAKVLKISNRGSSLKASKQVTEAQKESAVSKSLDLCPKSNGCARASINGWEWHKWSLSASPACRARVRGRLPRLQNRRRNSENISSQVSNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLCFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRPRISDIRELQYEKMGIGSSYLFRIDDGHVVDATKKGGIARFINHSCEPNCYTKVISFEGQKKIFIYAKRHINAGEEITYNYKFPLEEKKIPCNCGSKKCRRSLN 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09139 1219 MobiDBLite consensus disorder prediction 706 728 - -
Vifa1g09139 1219 MobiDBLite consensus disorder prediction 793 816 - -
Vifa1g09139 1219 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 3 1219 IPR044570 GO:0042800|GO:0051568
Vifa1g09139 1219 SUPERFAMILY SET domain 1076 1215 IPR046341 -
Vifa1g09139 1219 Gene3D SET domain 919 1219 IPR046341 -
Vifa1g09139 1219 SMART set_7 1080 1203 IPR001214 GO:0005515
Vifa1g09139 1219 ProSiteProfiles SET domain profile. 1080 1197 IPR001214 GO:0005515
Vifa1g09139 1219 SMART PostSET_3 1203 1219 IPR003616 -
Vifa1g09139 1219 Gene3D - 174 244 IPR035445 -
Vifa1g09139 1219 ProSiteProfiles Post-SET domain profile. 1203 1219 IPR003616 -
Vifa1g09139 1219 Pfam SET domain 1092 1196 IPR001214 GO:0005515
Vifa1g09139 1219 SUPERFAMILY GYF domain 178 233 IPR035445 -
Vifa1g09139 1219 CDD SET_SETD1 1068 1215 IPR037841 GO:0042800|GO:0048188
Vifa1g09139 1219 ProSiteProfiles GYF domain profile. 182 232 IPR003169 GO:0005515
Vifa1g09139 1219 MobiDBLite consensus disorder prediction 783 816 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09139 Vifa-Chr1 1446749981 1446757505 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09139 1071 1219 C2H2 Transcription Factor Family AT2G23740 36.257 1.14e-15 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa1g09139 SET 4.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09139 - - psat:127137952 1539.63