Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09138 ATGGAGATGAGCTGCCCGTCGAATGTTAATAGAGATGTCCCTACGTGTTCTACTAGCGCAGTTAATATTTCACACTCACACCAGAGTTTTGTGCAACAGCCTGCTTTTGTGAGTGGATGGATGTATGTGAATGAAAATGGACAAATGTGTGGTCCATATATTAAGGAGCAATTATATGGGGGGCTAACTACAGGTTTCTTGCCGTTTGAGCTTCCTGTGTATCCTGTAATCAATGGCACAATAATGAACCCTGTACCATTGAATTATTTCCAACAGTATCCGGACCATGTTTCCACCGGGTTTGTTTACATGGGTATGAATTTCGCAGACACAATGATGTCTACTAATGGCTCCTCTTCTTCTCAGGATATGACAATATATGGGCAAGATAGATCTTTTGAGCCTGCCGCTCTTATGGCTGTTAACGCTGATTCAGAGTCTGTTTCACAGTTAAATGTCAATGACTGCACTAAGGAATCCAATCACTTGAATTTGAATTCGGAGGCTTTCAGGAGGATTATTTCTTGTCAGATGTCGGGAGGAGAATGTTGTTGGCTTTATGAGGATAAAAAGGGTATGAAACATGGGCCGCATTCCATTTCAGAATTGATTTCCTGGCACCACCATGGATATCTTGAAGATTCAACAGTCATCTCCCATTTTGACAATAAGTATGGAAACTTTGTGTTGTTGGCTGCTGCAAATGTGTTGAAAGGAGATATATCTGGAACCATATGTGGATCAGATTCCAAAAGCAATGGAGTCGGTGATGTGATGAACTTAAATTTTGAAATATCTGAAGACATTTCTTCCCAATTGCACATGGGTGTTATGAAAGCTGCCCGAAGAGTTGTGCTAGATGGTATTATTGGCAATATCATTTCAGGATTTGTTACTGAAAAGAAATGCAAGAACCAAAAGATTGAGTCTTCTGATCGAACTTCTGAAACTTGCACATTGGACAGTAAAATGATGAATAATGGTACTTCTATTCCTCCTAGTGAGCCTGCACCTTCCCATTTTTTGGATGACCAGGCTTGTCATGAAATTTCCAGACTGTCTTCAACGAGTGTTAAGACAGTTGGAAGCATTGAAAATTTTTGGTGCTCATATTCTGTTGTTCGTAAAGCAATTGTTGATTATTGCTTGCTAGTCACGTGGAATGCAGTGTTTTTTGACACGCTAACAGAGTACTTAATTTCCTGGAGGAAAAAGAAATATTGGTCTCATCCTAAGCCTCCATCAACTTTTATTGAATCTAAAGATTATGTTGAAAAGATTAAATCAAAAGCTTTGGTTCTCAGGCCAGGTTCCTCTATATGCAATGATGATGCTGATATGCAGTCTGGCGTGATGACGACAGAAAGAGATTGTCATCCTGAGTTACTTATATCTGCTAATAACCTCAAAAGCCGAAACATAGCCGGAGCTCAAAGAGTTTCATGCAGTTATCATAATTCTAAAGTTTTGACATGCATTCTTGAATGTGTGGAGAACGATCTTCACTTCTCTGCAAAGGTGTCTCTAGCTGATTATGTTCGAAGTGTTGTTGAAAAGGAAGTAAACCAATTAATTCCTTCCCTAGAAAAAGATAAATTCAGTGAGGTTGATGATAGTAACTGCCATATCTCAGAGATGCTTACCAGTAAAACATCAGCTAAAGAAATTCTAAATGACAAGACTGTCGATCCTGTGAAAAATAGAGACTCAATTTGCATGTCTTCACCTGGAAACCAAATGTCTAATGTTTTCTCAAAAGCATTTCAAGAACTGTGTGGACATTTAAATGATGTGGTTGACGAAGAGGAGGTTGGTGACATGCCACCTGGATTTGAAAAAAATTCTCAAATAATATTCCCTCACTACAGCTCAAAATTCCGCCCTTCAAGAATAGTTGAATGTAATCCCAAGATTACAGAGTATGTTACTGCTGCACTGTGCAGACAGAAGCTGCATGATGAAGTCCTAGAGAAGTGGAAGTTCTCGATTCTTGATTCTACGATTAAACAGGTTCTTATGTCATCATGTACCATAAAGAAGAATTTTCAGTCTCGTGGTCATGAGAAGAGGAAGTCATTTGGTGCAATTAAGGAACAGTTGAATGGTGTTACTTCTGGACTGGGAAAAGGGAAGGAAGGCTCAAAAAGTTCTGGAGTTCCTTTGTTGGATGGAAATACATATCATCGTAAGAAGCTACCACGGAAAGAGTTTTGCTCCTTTCAGCCTGTTGTAGAAGATAATTTAGGGCCAGGGAAGAAGCCTCTGGCTAACTTACAGAAACATGTTTCTGGAGATGTGAATGAGAGTGCCAAAGTTAAAATAACTGCTATTAAACATGGAAAGACTAAGATGATTAAAGGGAAGAAGGATGCATCTTCTAAGAGCGGGTCTTCTTTCAATGTCGACAATAGCTCACCCAATGATCAATTATCCTTGAAGAATAAAACTAGCCAGAAAGTAGTGAAGTTTGCGCATACAGTTCAAAATGGTGTTATGGATGTCATGAAGTTCAATGAAAAGAGGTCATGGGCATCCTCTAAGAGCAGGTCTTCTATCAATGTCGATAAAAGCATACCCAGTGATCACTTATCCTTGAAGAACAAAACTAGCCAGAAAGTAGTAAAGTTTGCGCATACAGTTCAAAATGGTGTTACGGATATTATGAAGTTTAACGAAAACAGGCTATCGACATCAACTGATAATATTGTTGGTATGAAAGTAGCTAAAAGAAATAACTCTGATGTCACCATTCACAGGAAGACCACTGGTCATATATCTATAGAGAAACTAAGTGTGACAAATAAAGTGTCAAAACCAAAAAGGAAGCATCAAACAGATGTTGTTACATCCTCACTTCCTGCTAAGGTTTTGAAAATTTCAAATAGGGGGTCTAGTCTGAAAGCTAGCAAACAAGTAACTGAGGCACAGAAGGAATCTGCCGTATCCAAGTCATTGGATTTATGTCCTAAATCTAATGGTTGTGCTAGGGCTTCTATTAATGGGTGGGAATGGCATAAATGGTCACTAAGTGCCAGTCCTGCGTGTAGAGCACGTGTCAGGGGTCGTCTTCCACGTTTACAAAACAGGCGCAGAAATTCTGAAAACATTTCATCCCAGGTGTCAAATGGCAAGGGTCTTTCAGCAAGAACCAATAGGGTGAAATTGCGCAACCTTCTTGCTGCAGCTGAGGGTGCAGATCTTCTGAAAGTGCCTCAATTGAAGGCACGAAAAAAGCGATTATGTTTTCAAAGGAGCAAGATACACGACTGGGGTCTTGTTGCCTTAGAGCCAATAGAAGCAGAGGACTTTGTGATTGAATATATTGGAGAATTAATTCGTCCTCGGATATCGGATATACGTGAGCTTCAATATGAGAAGATGGGAATTGGAAGCAGTTACCTTTTCAGAATTGATGATGGTCATGTGGTTGATGCTACAAAGAAAGGCGGGATTGCAAGATTTATCAACCATTCTTGTGAGCCCAACTGTTACACAAAGGTTATATCTTTTGAGGGTCAAAAAAAGATTTTTATATATGCAAAGCGGCATATAAATGCCGGTGAAGAAATTACATACAATTATAAGTTTCCCTTGGAGGAGAAAAAGATTCCCTGCAACTGTGGTTCCAAAAAGATAATACTCCCAAAATACACGTTGCTCATTGAATATTTGAGGACTGTTACTCTATATTTCACTGGACTGTTGACATCAAATTGGACGTGTTGCAACAGTGCTTGTAAACCTTTACCTTGTATGTTTCCACTCGCTTAA 3771 0.3927 MEMSCPSNVNRDVPTCSTSAVNISHSHQSFVQQPAFVSGWMYVNENGQMCGPYIKEQLYGGLTTGFLPFELPVYPVINGTIMNPVPLNYFQQYPDHVSTGFVYMGMNFADTMMSTNGSSSSQDMTIYGQDRSFEPAALMAVNADSESVSQLNVNDCTKESNHLNLNSEAFRRIISCQMSGGECCWLYEDKKGMKHGPHSISELISWHHHGYLEDSTVISHFDNKYGNFVLLAAANVLKGDISGTICGSDSKSNGVGDVMNLNFEISEDISSQLHMGVMKAARRVVLDGIIGNIISGFVTEKKCKNQKIESSDRTSETCTLDSKMMNNGTSIPPSEPAPSHFLDDQACHEISRLSSTSVKTVGSIENFWCSYSVVRKAIVDYCLLVTWNAVFFDTLTEYLISWRKKKYWSHPKPPSTFIESKDYVEKIKSKALVLRPGSSICNDDADMQSGVMTTERDCHPELLISANNLKSRNIAGAQRVSCSYHNSKVLTCILECVENDLHFSAKVSLADYVRSVVEKEVNQLIPSLEKDKFSEVDDSNCHISEMLTSKTSAKEILNDKTVDPVKNRDSICMSSPGNQMSNVFSKAFQELCGHLNDVVDEEEVGDMPPGFEKNSQIIFPHYSSKFRPSRIVECNPKITEYVTAALCRQKLHDEVLEKWKFSILDSTIKQVLMSSCTIKKNFQSRGHEKRKSFGAIKEQLNGVTSGLGKGKEGSKSSGVPLLDGNTYHRKKLPRKEFCSFQPVVEDNLGPGKKPLANLQKHVSGDVNESAKVKITAIKHGKTKMIKGKKDASSKSGSSFNVDNSSPNDQLSLKNKTSQKVVKFAHTVQNGVMDVMKFNEKRSWASSKSRSSINVDKSIPSDHLSLKNKTSQKVVKFAHTVQNGVTDIMKFNENRLSTSTDNIVGMKVAKRNNSDVTIHRKTTGHISIEKLSVTNKVSKPKRKHQTDVVTSSLPAKVLKISNRGSSLKASKQVTEAQKESAVSKSLDLCPKSNGCARASINGWEWHKWSLSASPACRARVRGRLPRLQNRRRNSENISSQVSNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLCFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRPRISDIRELQYEKMGIGSSYLFRIDDGHVVDATKKGGIARFINHSCEPNCYTKVISFEGQKKIFIYAKRHINAGEEITYNYKFPLEEKKIPCNCGSKKIILPKYTLLIEYLRTVTLYFTGLLTSNWTCCNSACKPLPCMFPLA 1256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09138 1256 CDD SET_SETD1 1066 1211 IPR037841 GO:0042800|GO:0048188
Vifa1g09138 1256 ProSiteProfiles SET domain profile. 1078 1195 IPR001214 GO:0005515
Vifa1g09138 1256 SMART set_7 1078 1201 IPR001214 GO:0005515
Vifa1g09138 1256 Gene3D - 174 244 IPR035445 -
Vifa1g09138 1256 MobiDBLite consensus disorder prediction 781 814 - -
Vifa1g09138 1256 MobiDBLite consensus disorder prediction 704 726 - -
Vifa1g09138 1256 Pfam SET domain 1090 1194 IPR001214 GO:0005515
Vifa1g09138 1256 Gene3D SET domain 1015 1202 IPR046341 -
Vifa1g09138 1256 SUPERFAMILY GYF domain 178 233 IPR035445 -
Vifa1g09138 1256 SUPERFAMILY SET domain 1074 1210 IPR046341 -
Vifa1g09138 1256 MobiDBLite consensus disorder prediction 791 814 - -
Vifa1g09138 1256 ProSiteProfiles GYF domain profile. 182 232 IPR003169 GO:0005515
Vifa1g09138 1256 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 3 1211 IPR044570 GO:0042800|GO:0051568
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09138 Vifa-Chr1 1446749322 1446757505 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09138 1069 1207 C2H2 Transcription Factor Family AT2G23740 36.646 2.73e-14 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa1g09138 SET 5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09138 - - psat:127137952 1535.39