Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09133 ATGGCAAACGATACTTCTAGTTGTGATTTTCATAACAAACGACTTGGTCTTTTAAAAGATCAAGTTCATTTGGTGAAAAGGAAAGATTCTAATCGCTATGAGATTGCTGCCATACAAGATCAACTATCATTTGAGAAGGGTTTTTTTATAGTCATTCGAGCATGCCAGTTGTTAGCACAAAAGAATGATGGGATAATATTGGTTGGGGTGGCGGGTCCTTCGGGAGCAGGGAAGACTATATTTACGGAAAAGATACTCAACTTCATGCCCAGTGTTGCTGTTATTTCTATGGATAATTATAATGATGCTAGTCGAATTGTGGATGGAAACTTTGATGATCCACGCTTAACTGACTATGACACATTGCTCCAGAATTTACAAGATTTAAAGGAAGGAAAGACAGTCCAAGTCCCGATATATGATTTCAAGTCCAGTTCACGCGTAGGATACAGGACTGTAGAACCCCCGACTTCCAATATTGTGATTATAGAAGGTATCTATGCCTTGAGTGAGAAGTTGCGAACTTTGCTGGATCTTCGAGTTTCTGTTACAGGTGGAGTTCACCTTGACCTTGTAAAGCGAGTTATACGTGACATACAACGTGCTGGCCAAGAGCCTGAAGAAATTATTCATCAAATATCTGAGACGGTATATCCAATGTACAAGGCTTTCATTGAGCCAGATCTCAAGACGGCACATATAAAAATCACCAACAAATTTAATCCATTTACTGGATTCCAGAGCCCGACTTACATATTAAAGTCAGCAAAGAATGTAGCAGTTGATCAAATTAAAGCTGTTCTCTCTGAAGATTGTCAGGAAACAACCGAGCAAACTTATGATATATATCTTCTACCACCCGGTGAAGACCCAGAAACATGCCAATCATATTTAAGGATGCGAAACAAGGATGGGAAATACAGTCTCATGTTTGAGGAATGGGTGACAGACAATCCCTTTGTGATATCGCCGAGAATTACTTTTGAGGTTTGTGTGAAACTAGATTGGCTTGAGCAACTTAATCGACATTATGTTCAGGTACAAGGGAAAGATCGCTTAGTTTTGAAAGAGATTGGAGATCAGCTGGGTCTAGAAGGTTCCTACATTCCTCGTACATACATCGAGCAAATTCAACTTGAAAGGCTTGTGAATGAGGTTATGGCTCTGCCAGATGATTTGAAGACAAAGCTCAGCCTAGATGAGGATTTGGTTTCAAGCCCCAAAGAAGCACTTTCTAGAGCCTCTGCTGACAGGGTTGCGATGAGAAATGAGAATATGAGGAGTGGATTGTCACAGTCATATACAAATCAAAGGGACAAAAATGCAGCCAAAGTTAATGGATATTTTACCAACAATCGAGGGTTTGGTGAAAGAAATTCAGATTCCTCCACAACACAATTAAATCAGAGAGCCATTAGTCAGCTTTCAGAACAGATTTCTGCCCTCAATGATAGAATGGATGAATTTACAAATCGCATTGAAGAGCTGAATAGCAAGCTGACCATTAGGAATAAGTCTCCAAGCCAACAAAATATGTTAGCTCAAGCCGAAGCCTGCAATGGTTCTGCTCCCACGTCTTACTTCATCAACAGTTTGGGCAATGGTAGCATAACTGGTTATAAGATGCCACATTCCTCATCTACATCCCAATTAAATAAGGAGTCTCCCTTAATAGATGAGATATCAGGCATTACACGTGGCCAGCGTCAGATCATGCATCAAATGGACAATCTAAATAATCTTCTTCGGGGTGGTTTAGGGGAAAGGTCTCCGCAAACAAGAATCAACAACAAGAGCATAGTTACAGATTTGAATTATATTGGAGCAAGTATTGTAGTGGTAGTCGCAGTTGGTTGTTTGGGGATCTTTTTGAGGCGAAAGTGA 1884 0.4023 MANDTSSCDFHNKRLGLLKDQVHLVKRKDSNRYEIAAIQDQLSFEKGFFIVIRACQLLAQKNDGIILVGVAGPSGAGKTIFTEKILNFMPSVAVISMDNYNDASRIVDGNFDDPRLTDYDTLLQNLQDLKEGKTVQVPIYDFKSSSRVGYRTVEPPTSNIVIIEGIYALSEKLRTLLDLRVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLKTAHIKITNKFNPFTGFQSPTYILKSAKNVAVDQIKAVLSEDCQETTEQTYDIYLLPPGEDPETCQSYLRMRNKDGKYSLMFEEWVTDNPFVISPRITFEVCVKLDWLEQLNRHYVQVQGKDRLVLKEIGDQLGLEGSYIPRTYIEQIQLERLVNEVMALPDDLKTKLSLDEDLVSSPKEALSRASADRVAMRNENMRSGLSQSYTNQRDKNAAKVNGYFTNNRGFGERNSDSSTTQLNQRAISQLSEQISALNDRMDEFTNRIEELNSKLTIRNKSPSQQNMLAQAEACNGSAPTSYFINSLGNGSITGYKMPHSSSTSQLNKESPLIDEISGITRGQRQIMHQMDNLNNLLRGGLGERSPQTRINNKSIVTDLNYIGASIVVVVAVGCLGIFLRRK 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09133 627 PANTHER URIDINE KINASE 38 392 - -
Vifa1g09133 627 Coils Coil 472 499 - -
Vifa1g09133 627 CDD UMPK_like 67 239 - -
Vifa1g09133 627 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 238 IPR027417 -
Vifa1g09133 627 PRINTS Uridine kinase signature 132 147 - -
Vifa1g09133 627 PRINTS Uridine kinase signature 65 82 - -
Vifa1g09133 627 PRINTS Uridine kinase signature 224 237 - -
Vifa1g09133 627 PRINTS Uridine kinase signature 188 198 - -
Vifa1g09133 627 Pfam CYTH domain 253 330 IPR023577 -
Vifa1g09133 627 SUPERFAMILY CYTH-like phosphatases 274 376 IPR033469 -
Vifa1g09133 627 Gene3D - 66 268 IPR027417 -
Vifa1g09133 627 Pfam Phosphoribulokinase / Uridine kinase family 68 236 IPR006083 GO:0005524|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09133 Vifa-Chr1 1446727000 1446736997 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09133 66 236 PRT Gene Family AT4G26510 29.444 7.32e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09133 K00876 - gmx:100781286 1014.6