Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09127 ATGGTTCCTAGTGATATTAATGGATTCAATTATATAGCTCCTGTTGAGAATTCATTCCAAATTCCACAAAACTATGTGTTGCCACAAAGTGAAATACCAAACTTTCATCTAAATAATCTCTTATGCACTTTACCAAACTACCATTACCCATCATCAGGATTAGGCCATGAATTTGCACCTCCTTCATCTCTAAGCAGCAACTCAACAACTTCTGATGAAGCAGATGAGCTCCAGTTCAGCAACGTGATCGACGAAAGGAAGCACCGACGAATGATATCCAACAGAGAATCAGCAAGGAGATCAAGGATGAGGAAACAAAAACACTTGGATGAACTCTGGTCACAAGTGGTAAGACTCAGAACTGAGAATCATAATCTTGTTGACAAACTCAATCATGTTTCTGAGTCACATGAGAGAGTTGTTCTAGAGAATGCACGACTTAAGGAACAAACTCTCGATCTTCGCCAAATGGTTGCTGATATGCAAATTGGTAACTCTTTTCCTTGCAACATGGAAGATTTTTCTGAAATTCCATGCTCCACCACTTCACAACTCAATGGTGATGATTCCTCAAAACCAATCAATTCCACATGA 594 0.3923 MVPSDINGFNYIAPVENSFQIPQNYVLPQSEIPNFHLNNLLCTLPNYHYPSSGLGHEFAPPSSLSSNSTTSDEADELQFSNVIDERKHRRMISNRESARRSRMRKQKHLDELWSQVVRLRTENHNLVDKLNHVSESHERVVLENARLKEQTLDLRQMVADMQIGNSFPCNMEDFSEIPCSTTSQLNGDDSSKPINST 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09127 197 FunFam BZIP transcription factor 84 135 - -
Vifa1g09127 197 Pfam bZIP transcription factor 86 138 IPR004827 GO:0003700|GO:0006355
Vifa1g09127 197 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 9 169 IPR044521 -
Vifa1g09127 197 SMART brlzneu 82 146 IPR004827 GO:0003700|GO:0006355
Vifa1g09127 197 CDD bZIP_plant_GBF1 87 137 IPR045314 GO:0003700|GO:0006355
Vifa1g09127 197 SUPERFAMILY Leucine zipper domain 86 136 IPR046347 GO:0003700|GO:0006355
Vifa1g09127 197 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 89 104 IPR004827 GO:0003700|GO:0006355
Vifa1g09127 197 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 84 147 IPR004827 GO:0003700|GO:0006355
Vifa1g09127 197 Gene3D - 84 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09127 Vifa-Chr1 1446207751 1446208344 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09127 49 177 bZIP Transcription Factor Family AT3G30530 57.857 3.01e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa1g09127 bZIP_1 5.2e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09127 - - gmx:100778078 256.529