Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09122 ATGGGTGAGGAAAGAGGCAGTGCAAATAGCTCAAGTGTTATTACAATGCTAGTATTATGTATGTTTGTGTTTCATCCTAAGATGATTCATGCAGATACGTACACCGTTGGTGATGAAAAAGGTTGGTCCTTTGATGTTGAAAACTGGCCTTCAGGAAAAGCTTTCAAGGAAGGTGATATACTTGTATTCAATTACACTCCTGTGATACACAATATGGTGACAGTGAAAGAGTTTGGCTACAATTCATGTGTGCCTCTAGGAGGATCAGGATTACACATCTCTGGAGCAGATAAAATTACACTTGTTAAGGGAATGAACTATTTCATATGTGGTATTCCTGGTCATTGTAGCAAGGGAATGAAAATTGCGGTCAATGCTAATTAG 384 0.3854 MGEERGSANSSSVITMLVLCMFVFHPKMIHADTYTVGDEKGWSFDVENWPSGKAFKEGDILVFNYTPVIHNMVTVKEFGYNSCVPLGGSGLHISGADKITLVKGMNYFICGIPGHCSKGMKIAVNAN 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09122 127 ProSiteProfiles Phytocyanin domain profile. 32 127 IPR003245 GO:0009055
Vifa1g09122 127 PANTHER BLUE COPPER PROTEIN 24 125 IPR039391 GO:0009055
Vifa1g09122 127 FunFam basic blue protein-like 32 126 - -
Vifa1g09122 127 SUPERFAMILY Cupredoxins 33 126 IPR008972 -
Vifa1g09122 127 Gene3D - 30 127 IPR008972 -
Vifa1g09122 127 Pfam Plastocyanin-like domain 45 120 IPR003245 GO:0009055
Vifa1g09122 127 CDD Plantacyanin 33 126 IPR041844 -
Vifa1g09122 127 ProSitePatterns Type-1 copper (blue) proteins signature. 104 120 IPR028871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09122 Vifa-Chr1 1444807773 1444808265 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09122 14 126 Phytocyanin Superfamily AT1G17800 38.136 1.34e-18 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09122 - - psat:127106281 182.956