Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09118 ATGAACCAGTATCACATCTACGAAGCCATTGGTCGTGGCAGATACTCCACGGTCTATAAAGGCAGAAAGAAGAAGACCATCGAGTATTTTGCGATTAAAAGCGTTGATAAATCTCAGAAAAACAAGGTTCTTCAAGAAGTTAGGATTCTTCACACTTTGGATCACCAAAATGTGCTCAAGTTTTATTCATGTGTTAACTCTCAGGAAGACCTTAACATCCAAAATAATAAACGGTTTTTGGCTAAGTCCTGGGATAACCTAGAAGAACTTCCTGATGATCATGGGGATGATATAGAGGAGGAAATTGAGGACCCTAAAGCTGATTTTATAAGTGCTGATTATGAAGATGAATTTCAGGATATTCAGCTTCCTGAAGAATCTGTTAATGAGCTTGCTTGTGACCTCGTTAGAGCTCTGCAGTATTTACATTCAAATGGAATAATTTATTGTGATCTGAAACCATCAAATATTCTACTAGATGAAAATGGACGTACAAAGCTCTGTGATTTCGGATTGGCCAGAAAGTTAAAAGAGATATTGAAAGTTCCTTCTTCTTCGTTGCCTCAAGCAAAACGTGGAACACCCTCTTACATGGCTCCGGAGCTTTTTGAAGATGGCGGAGTTCATTCTTATGCTTCTGATTTCTGGGCTCTAGACCCGACTCCACCTCTCCCTGGAAATCCAAGTCGACCTTTTGTCAATTTAATTAATTCTCTGTTTGTCAAAGATCTAGCCGAAAGAATACAGTGGCCCGAGCTTTGTGGTCATGCGCTTTTTGCTTTGGGAAGGAAAGCAGATGCTTTAATGGTATGGGAGCAAGGCTTTGAACTTGCTCAGCATCAATCTGCAGATTTGAAGCAGTTGTTAGAACTTGAAGAGCTTTTGGTGAAAGAAAAACAAGGTAGAGAGTCTAATAAATGTGATGGCCAAGTGAATGGAAGCCCTGATGTTATTGATAATTTGCGCTATAACTCTGAGTCGTGTAATGATTCAAGTGATAATTCAGAATCATGTGATAAAGTATTTACTAATAGCGGTGAATCAAGTGACTCAAACGATGCTCCTGAAATTCTTAAAAAGCCCAGTTTTAAGTTTACTTTCCCCAGTGAAAAAAGTAGCGAAGCAAGGAAAAATAAAAAGTTCTCTGTTGCTCGGATTTCAAAGACAAAGTCTATAAGTGTAGATTTTCGGCTTTCACGGGGAATAGCAGAGGTTAACGAAGGGAAATATGCTCATGCTATATCCATTTTTGACCAGGAAAACAAGAAGCAATTATTTTGCCTAATTAGTGATTGTATCTATGAGTTCAACGCTTTTGGATCATGA 1326 0.3861 MNQYHIYEAIGRGRYSTVYKGRKKKTIEYFAIKSVDKSQKNKVLQEVRILHTLDHQNVLKFYSCVNSQEDLNIQNNKRFLAKSWDNLEELPDDHGDDIEEEIEDPKADFISADYEDEFQDIQLPEESVNELACDLVRALQYLHSNGIIYCDLKPSNILLDENGRTKLCDFGLARKLKEILKVPSSSLPQAKRGTPSYMAPELFEDGGVHSYASDFWALDPTPPLPGNPSRPFVNLINSLFVKDLAERIQWPELCGHALFALGRKADALMVWEQGFELAQHQSADLKQLLELEELLVKEKQGRESNKCDGQVNGSPDVIDNLRYNSESCNDSSDNSESCDKVFTNSGESSDSNDAPEILKKPSFKFTFPSEKSSEARKNKKFSVARISKTKSISVDFRLSRGIAEVNEGKYAHAISIFDQENKKQLFCLISDCIYEFNAFGS 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09118 441 Gene3D Phosphorylase Kinase; domain 1 1 75 - -
Vifa1g09118 441 MobiDBLite consensus disorder prediction 306 352 - -
Vifa1g09118 441 Gene3D Transferase(Phosphotransferase) domain 1 108 302 - -
Vifa1g09118 441 SUPERFAMILY Protein kinase-like (PK-like) 1 274 IPR011009 -
Vifa1g09118 441 ProSiteProfiles Protein kinase domain profile. 4 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09118 441 Pfam Protein kinase domain 4 218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09118 441 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vifa1g09118 441 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 219 259 IPR044591 GO:0000911|GO:0000914|GO:0008017
Vifa1g09118 441 MobiDBLite consensus disorder prediction 302 355 - -
Vifa1g09118 441 SMART serkin_6 4 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09118 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09118 Vifa-Chr1 1443828223 1443832495 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09118 2 265 MAP Kinase Kinase Kinase AT3G13530 27.852 1.06e-22 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_ULK4 Vifa1g09118 Pkinase 9.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09118 K17545 - lang:109329212 354.755