Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09104 ATGGAAGAGGAACATAAGGGAGGTGAAGGAGTAAAATATAGGGGTGTAAGGAGAAGACCATGGGGAAAATATGGGGCAGAGATTAGAGACCCTACAAAGCCAACTGGAAGACATTGGTTAGGAACATTTGACACAGCTGAGGAAGCTGCTAGAGCTTATGATTGTGCTGCCATTCGTTTGAGAGGTGCTCTTTCCATTCTCAATTTTCCTGATGAATACCATCTTCATCTTTCTTCTTTATCGCGGTCGAAGTCATCGTCGTCTACCACTTGTTCTAGAGAGCAAAAGGAAGTAATTGAATTTGAGTATTTGGATAACAAGGTGTTGGAAGATCTTCTTGGGTCATCTAAAGTAGAGAATGATGATTGCATTGATCTATAG 381 0.4121 MEEEHKGGEGVKYRGVRRRPWGKYGAEIRDPTKPTGRHWLGTFDTAEEAARAYDCAAIRLRGALSILNFPDEYHLHLSSLSRSKSSSSTTCSREQKEVIEFEYLDNKVLEDLLGSSKVENDDCIDL 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09104 126 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Vifa1g09104 126 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Vifa1g09104 126 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Vifa1g09104 126 Gene3D AP2/ERF domain 11 71 IPR036955 GO:0003700|GO:0006355
Vifa1g09104 126 SUPERFAMILY DNA-binding domain 12 72 IPR016177 GO:0003677
Vifa1g09104 126 Pfam AP2 domain 12 62 IPR001471 GO:0003700|GO:0006355
Vifa1g09104 126 ProSiteProfiles AP2/ERF domain profile. 12 70 IPR001471 GO:0003700|GO:0006355
Vifa1g09104 126 FunFam Ethylene-responsive transcription factor 2 12 72 - -
Vifa1g09104 126 PANTHER DNA-BINDING DOMAIN 6 110 IPR044808 GO:0003700|GO:0009873
Vifa1g09104 126 SMART rav1_2 12 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09104 Vifa-Chr1 1442312511 1442312891 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09104 11 115 AP2-EREBP Transcription Factor Family AT3G23230 58.120 9.32e-39 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g09104 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09104 - - gmx:100796977 153.68