Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09093 ATGATTTCAAAAACAAGAACCTTTATCATTAATGTTGCTATCATCATAGCAATTTTATATAAAACAAATATTGTATTATCAGATGACAACAGTCAAATTCCTGCAGATAGATCCCAAGTAGATTCATGGTTTAATAAGATTGTTGGTCCTTTAAGTCAAAGAAAAAGCACCCTTGAGCCTGCATTGGTGAGTGCAGAGGCTGCTCCTAAGGTTATTAAAGTAATGCAAGACGGTAGTGGGGAATTTAAAACAATCACTGCTGCCATCAACAGCATACCTACAGGAAACAACAAACGTGTGATTATTAAAATAGGTCCCGGAAACTATAAGGAGAAAATAAAAATTGAAAGGTCTAGACCTTTTATTACATTTTTAGGCAATCCAAAAAATATGCCTAATTTAACCTTTGATGGTACTGCGAAAAAATATGGCACAGTTGATAGTGCCACATTGATTGTCATGTCTGATTACTTTGTAGCAGCTAACATCGCAATATCGAATTCTGCGGCGAGACCTGATGCAAGAAGGTCAGGAGGTCAAGCTGTTGCATTGAGAACTTCCGGTGACAAATCAGCATTTTATAATTGCAAAATATATGGATTCCAGGATACTGTATGTGATGACAGAAATAATCATCTTTTTAAAGATTGCTTAATTCAAGGCACAGTAGATTACATATTCGGAAGTGGAAAGTCATTATATTTAAAAACTGAATTACGAACGCTTGGAACTAAAGACGTGACAGTGATAGTAGCACAAGCAAGAAAAAGTGAATCAGAAGATTATATATACTCATTTGTGCATTGTGATTTAACTGGAACTGGAACTCGTACTTTTTTGGGTAGAGCATGGTTGTCTCATGCCAAAGTTGCATTTGCTTACTCAACTATGACCAAAGTTATTCACCCAGAAGGATGGTGTAACAACTTGCATTCTGAATATAATAAAACTTTATTCTTTGGAGAATATAAGAACACTGGACCAGGTGCAGATACCAAAAAACGTGTAAAATTCACAAAACAATTATCTGATGGAGAAGCTAAACCTTTCATTACACTTGGAATCATTCAAGGATCTAAATGGCTGCTTCCTCCTCCAAATTTCTAA 1107 0.3541 MISKTRTFIINVAIIIAILYKTNIVLSDDNSQIPADRSQVDSWFNKIVGPLSQRKSTLEPALVSAEAAPKVIKVMQDGSGEFKTITAAINSIPTGNNKRVIIKIGPGNYKEKIKIERSRPFITFLGNPKNMPNLTFDGTAKKYGTVDSATLIVMSDYFVAANIAISNSAARPDARRSGGQAVALRTSGDKSAFYNCKIYGFQDTVCDDRNNHLFKDCLIQGTVDYIFGSGKSLYLKTELRTLGTKDVTVIVAQARKSESEDYIYSFVHCDLTGTGTRTFLGRAWLSHAKVAFAYSTMTKVIHPEGWCNNLHSEYNKTLFFGEYKNTGPGADTKKRVKFTKQLSDGEAKPFITLGIIQGSKWLLPPPNF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09093 368 SUPERFAMILY Pectin lyase-like 66 362 IPR011050 -
Vifa1g09093 368 FunFam Pectinesterase 67 364 - -
Vifa1g09093 368 Pfam Pectinesterase 72 358 IPR000070 GO:0030599|GO:0042545
Vifa1g09093 368 ProSitePatterns Pectinesterase signature 2. 219 228 IPR033131 -
Vifa1g09093 368 Gene3D - 66 364 IPR012334 -
Vifa1g09093 368 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 64 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09093 Vifa-Chr1 1438999478 1439000770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09093 11 366 Carbohydrate Esterase AT1G69940 56.704 6.09e-153 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09093 K01051 - gmx:100786427 517.309