Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09070 ATGGTTGAGAATATGAATAGAAGCAACTTTGAAGTGTTGGGAATGTGTTGTGCCACAGAAGCAACACTGGTTGAAAGAATTCTGAAGCCTCTTCATGGTGTCAAACATGTCTCAGTAATTGTTCCTACTCGAACCGTTACTGTCGTCCATGATGTTCTCCTCATTTCTGAATCACAAATAGTTGATGCGCTGAATACAGCAAGGCTTGAAGCTAGTTACAGACCAAAGGGAGAGACCAATAATGAAAAGAAATGGCCAGACATAGTTACAATGGCGTGTGGATTGTTACTTTCAATTTCATTTTTGAAGTATATATATTCTCCTTTGGAATGGTTGGCTTTTGGTTCTGTTGTTATTGGATTTCCTAAAATTCTATTAAGGGCTATAGCTTCTATTAGAGCTCTTACTCTTAATATCAACATTTTAGTCCTTTTGGCAGTATGTGGAACTGTTGCTTTACAAGATTTTACAGATGGCGGAGTCATAATCTTTCTCTTCTCCATTGCTCAGTGGCTTGAAACAAGAGCAACTCACAAGGCAATGGTTGCAATGTCCTCTTTAACAAACATGGCTCCTCAAATGGCCATTATTGTCGAGACCGGGGAACGCGTCGATGTCAATGATGTTAAGATCAACACCATCCTTGCTGTCAAGGCTGGTGATGCTATTCCTCTAGATGGAGTTGTGGTTGAAGGAAAGTGTGAAGTTGATGAAAAAATGTTAACAGGAGAATCATTCCCCGTCCCCAAAGAACCAGATTCATTTGTCTGGGCTGGAACTATCAATATGAATGGATATATAAGTGTAAGAACTACAGTGTTGGCAAAAGACACAGTAGTGGCAAGAATGTCAAGATTTGTTGAAGAAGCTTCTGGCAGAAAATCAAAAGCTCAAAGATTTATAGATAATTTTGCAAAATACTATATTCCTGTGGTTGTGTTAATTTCAGCTAGCATTGCAGTGGTTCCAGCTGCATTAAACGTTACCGATATTGAGACTTGGTTTCATCTATCACTCGTTGTTTTATTGAGTGGATGCCCTTGTGCTCTTATTCTCTCCACGCCTGTTGCAATCTTTTGTGCTCTCACAAAAGCTGCAATAAGTGGATTGCTCTTGAAAGGTGGAGATTATCTTGAAACACTTTCTAGAATTAAGACTGTGGCTTTTGATAAAACAGGCACAATAACAAGAGGAGAGTTCGTTGTAACCGATTTTAGTTCAGCCAATGAATTTAACAAAGAAACCTTATTGTACTGGATTTCAAGTATTGAGAGTAAATCAAGTCATCCAGTGGCAGGTGCACTAGTGGAATATGGAATGTTGCACTCTATCAAACCAGTCCCGGAAAATGTGGAGAATTTTCAAAATTTTCCAGGTGAAGGAATTTTCGGCACAATTGATGGGAGGAATATCTACATAGGGAATAGGAGAATTGGTCTCAGAGCTGTCTGTGAAAGAGGTGATTGTATTCAAAGCCATGAGATTTCTACGTCTAAGAAACGATACGGCGAAGACACTCTAGTTGGAGTGTTCAGCTTAGTTGATGCTTGTAGAACAGGTGCTTTAGAAGCAATGGAAGAGTTAAAGTTGTTAGGTGTGAGATCAGTCATGCTGACAGGAGATACCTCACAGGTTGCTATGTATGTTCAGAGTCAGCAGTTAAACAATGCTATAGACATTGTTCATTGCAGAGCTTCTACCACATGA 1707 0.3943 MVENMNRSNFEVLGMCCATEATLVERILKPLHGVKHVSVIVPTRTVTVVHDVLLISESQIVDALNTARLEASYRPKGETNNEKKWPDIVTMACGLLLSISFLKYIYSPLEWLAFGSVVIGFPKILLRAIASIRALTLNINILVLLAVCGTVALQDFTDGGVIIFLFSIAQWLETRATHKAMVAMSSLTNMAPQMAIIVETGERVDVNDVKINTILAVKAGDAIPLDGVVVEGKCEVDEKMLTGESFPVPKEPDSFVWAGTINMNGYISVRTTVLAKDTVVARMSRFVEEASGRKSKAQRFIDNFAKYYIPVVVLISASIAVVPAALNVTDIETWFHLSLVVLLSGCPCALILSTPVAIFCALTKAAISGLLLKGGDYLETLSRIKTVAFDKTGTITRGEFVVTDFSSANEFNKETLLYWISSIESKSSHPVAGALVEYGMLHSIKPVPENVENFQNFPGEGIFGTIDGRNIYIGNRRIGLRAVCERGDCIQSHEISTSKKRYGEDTLVGVFSLVDACRTGALEAMEELKLLGVRSVMLTGDTSQVAMYVQSQQLNNAIDIVHCRASTT 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09070 568 SUPERFAMILY HAD-like 376 552 IPR036412 -
Vifa1g09070 568 Gene3D - 379 552 IPR023214 -
Vifa1g09070 568 Pfam Heavy-metal-associated domain 10 63 IPR006121 GO:0046872
Vifa1g09070 568 Pfam E1-E2 ATPase 201 366 - -
Vifa1g09070 568 NCBIfam cadmium family heavy metal-translocating P-type ATPase 139 552 - -
Vifa1g09070 568 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 3 563 - -
Vifa1g09070 568 Gene3D - 1 73 - -
Vifa1g09070 568 FunFam Putative cadmium/zinc-transporting ATPase 3 2 74 - -
Vifa1g09070 568 NCBIfam HAD-IC family P-type ATPase 161 410 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g09070 568 SUPERFAMILY Calcium ATPase, transmembrane domain M 139 473 IPR023298 -
Vifa1g09070 568 SUPERFAMILY HMA, heavy metal-associated domain 3 75 IPR036163 GO:0046872
Vifa1g09070 568 ProSiteProfiles Heavy-metal-associated domain profile. 6 72 IPR006121 GO:0046872
Vifa1g09070 568 NCBIfam heavy metal translocating P-type ATPase 139 562 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vifa1g09070 568 Gene3D - 177 291 - -
Vifa1g09070 568 SUPERFAMILY Calcium ATPase, transduction domain A 202 287 IPR008250 -
Vifa1g09070 568 PRINTS P-type cation-transporting ATPase superfamily signature 237 251 - -
Vifa1g09070 568 PRINTS P-type cation-transporting ATPase superfamily signature 531 541 - -
Vifa1g09070 568 PRINTS P-type cation-transporting ATPase superfamily signature 509 520 - -
Vifa1g09070 568 PRINTS P-type cation-transporting ATPase superfamily signature 388 402 - -
Vifa1g09070 568 Pfam haloacid dehalogenase-like hydrolase 384 557 - -
Vifa1g09070 568 Gene3D - 399 517 IPR023299 GO:0000166
Vifa1g09070 568 FunFam Copper-transporting ATPase 1, putative 177 291 - -
Vifa1g09070 568 FunFam Putative cadmium/zinc-transporting ATPase 3 399 517 - -
Vifa1g09070 568 CDD HMA 10 72 IPR006121 GO:0046872
Vifa1g09070 568 ProSitePatterns E1-E2 ATPases phosphorylation site. 390 396 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09070 Vifa-Chr1 1436379571 1436382223 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09070 3 561 Primary Pumps ATPases AT4G30110 56.437 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09070 K01534 - gmx:100815324 884.019