Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09067 ATGATTGATACGATGAAGAAGACCATGGTGGAATGCTTCAAGCGCCATGGTGAGAGTTCACCGAACCACAAGGATTCAGAATCACCCACCCAACCAACGAAGAACGAGAATCACGTTTCTGCAAAAATGGAAGCACCAAGCACTCAGCATACACAAATTATTGAAGTCAGTAGAGATCTTCCTGATGTAGCAAGGAAAATTTGTGGGGAAGCAACATGTGAGTTCTCAGATGCTGGATCCATCTCAAAGGATTCTGAAGAACGATCAACTTCGATGCGGAAGCTTCTGATAGCAGTGGTCCTTTGCGTAATTTTCATGGCTGTTGAGGTAGTTGGTGGTATTAAGGCTAATAGTCTTGCAATATTGACTGATGCAGCACATTTGCTTTCAGATGTTGCAGCATTTGCCATCTCCTTATTTTCTATATGGGCTGGGGGATGGGAACCAAATCCTCGTCAGTCGTTTGGATTTTTTAGAATAGAGATTCTTGGCGCTTTGGTTTCTATGCAATTAATATGGCTGCTTGCTGGGATTCTTGTATATGAAGCCATTGCTAGACTCATTGCAGGTCCTCAAAATGTGGATGGGTTTTTAATGTTTGTAGTTGCTGCATTTGGTCTTGTGGTTAACATCATTATGGCTTTGGTATTGGGTCATGATCACGGACACGGCCACGGACACGGGCATGATCACGGACACGGGCATGATCACGGACACGGACATGATCATCATGGCCACATCCATGGCATTTCAGTTTCTACCAATCACGATATAAAGCAAACACAAGATGAGCATCATCACACACACAGTGATCACACTCACCCTCATGATGTTGAAAAGCATTCTAATGATGCACCCCACCATACTCATGAAGATCACGCGCAAGATCCCAAAGAGGGTGCTGTCCCACTTCTTGGTGAATCAAAAGCCATACCTGAGAAGAAGAAACGCAACATAAACGTACACGGGGCTTATCTCCATGTACTTGGGGATTCTATCCAGAGTGTTGGAGTAATGATTGGCGGAGCAATCATATGGTATAAACCTGAATGGAAAATAGTTGATTTAATTTGCACTCTAATCTTTTCTGTAATTGTTTTGGCCACAACTATCAACATGCTGCGAAACATTTTGGAAGTCCTGATGGAGAGCACTCCGCGTGAGATAGATGCTACTCAACTTCAAAAGGGCCTATTGGAGATGGAAGAAGTAGTGGCTATTCATGAGCTGCACATATGGGCCATTACAGTTGGGAAGGTATTGCTAGCTTGTCATGTTAAAATCAGTCCTGAAGCAGATGCCGATGAGATGTTGGACAAAGTTATAGACTACATCAAGAGGGTGCATAACATCAGTCATGTAACTATCCAGATAGAACGCTAG 1383 0.4338 MIDTMKKTMVECFKRHGESSPNHKDSESPTQPTKNENHVSAKMEAPSTQHTQIIEVSRDLPDVARKICGEATCEFSDAGSISKDSEERSTSMRKLLIAVVLCVIFMAVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSIWAGGWEPNPRQSFGFFRIEILGALVSMQLIWLLAGILVYEAIARLIAGPQNVDGFLMFVVAAFGLVVNIIMALVLGHDHGHGHGHGHDHGHGHDHGHGHDHHGHIHGISVSTNHDIKQTQDEHHHTHSDHTHPHDVEKHSNDAPHHTHEDHAQDPKEGAVPLLGESKAIPEKKKRNINVHGAYLHVLGDSIQSVGVMIGGAIIWYKPEWKIVDLICTLIFSVIVLATTINMLRNILEVLMESTPREIDATQLQKGLLEMEEVVAIHELHIWAITVGKVLLACHVKISPEADADEMLDKVIDYIKRVHNISHVTIQIER 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09067 460 MobiDBLite consensus disorder prediction 24 47 - -
Vifa1g09067 460 MobiDBLite consensus disorder prediction 14 47 - -
Vifa1g09067 460 SUPERFAMILY Cation efflux protein transmembrane domain-like 89 383 IPR027469 -
Vifa1g09067 460 MobiDBLite consensus disorder prediction 222 300 - -
Vifa1g09067 460 Gene3D Cation efflux protein transmembrane domain 91 381 IPR027469 -
Vifa1g09067 460 MobiDBLite consensus disorder prediction 258 298 - -
Vifa1g09067 460 NCBIfam cation diffusion facilitator family transporter 92 460 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Vifa1g09067 460 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 389 459 IPR036837 -
Vifa1g09067 460 Pfam Cation efflux family 95 382 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Vifa1g09067 460 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 47 460 - -
Vifa1g09067 460 MobiDBLite consensus disorder prediction 222 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09067 Vifa-Chr1 1436257617 1436263293 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09067 43 460 Inorganic Solute Cotransporters AT2G46800 66.432 9.93e-177 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09067 K14689 - gmx:100794876 595.504