Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09066 ATGTGCAGAGACAGTCTTCTCTTCCATCACCAAACCATACCTCCAAAACTCGATCCATCCCAGGTAGTTGAAGTCTACGTCCGTGTAACCGGAGGCGAAGTCGACGCCGCCAGTTCCCTCGCCCCAAAGATTGGTCCTCTCGGTCTCTCCCCAAAAAAGATCGGAGAAGACATCGCGAAAGAAACAGCAAAGGACTGGAAGGGTCTCCGCGTGACAGTCAAACTAACCGTGCAAAATCGGCAAGCGAAGGTTGCGGTGGTTCCATCTGCCGCATCGCTGGTGATCAAGGCCTTGAAGGAGCCTGAGAGAGACAGGAAGAAGACGAAGAATATTAAGCATAATGGGAATATTTCTCTTGATGATGTTATTGAGATTGCGAAGGTGATGAAGCCGAGATCGATGGCGAAGGAGCATGGTGGGACAGTGAAGGAGATTCTGGGAACTTGTGTTTCGGTTGGCTGTACTGTTGATGGGAAAGATCCCAAGGATTTGCAACAGGAGATTAATGACGGGGATGTTGAGATTCCTTTGGAATAG 537 0.4953 MCRDSLLFHHQTIPPKLDPSQVVEVYVRVTGGEVDAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAASLVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKVMKPRSMAKEHGGTVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEIPLE 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09066 178 FunFam 60S ribosomal protein L12 94 176 - -
Vifa1g09066 178 SUPERFAMILY Ribosomal protein L11, C-terminal domain 88 161 IPR036769 -
Vifa1g09066 178 SMART rl11c 25 157 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vifa1g09066 178 ProSitePatterns Ribosomal protein L11 signature. 143 158 IPR020785 GO:0003735|GO:0005840|GO:0006412
Vifa1g09066 178 PANTHER 60S RIBOSOMAL PROTEIN L12 14 163 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vifa1g09066 178 FunFam 60S ribosomal protein L12 13 93 - -
Vifa1g09066 178 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 10 99 IPR036796 -
Vifa1g09066 178 Pfam Ribosomal protein L11, RNA binding domain 87 156 IPR020783 GO:0003735|GO:0005840|GO:0006412
Vifa1g09066 178 Hamap 50S ribosomal protein L11 [rplK]. 21 158 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vifa1g09066 178 Pfam Ribosomal protein L11, N-terminal domain 25 81 IPR020784 -
Vifa1g09066 178 Gene3D - 94 176 IPR036769 -
Vifa1g09066 178 Gene3D - 9 93 IPR036796 -
Vifa1g09066 178 CDD Ribosomal_L11 25 156 IPR000911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09066 Vifa-Chr1 1436118978 1436120857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09066 13 178 Cytoplasmic Ribosomal Protein Gene Family AT5G60670 87.952 5.82e-105 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09066 K02870 - cit:102627399 309.686