Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09062 ATGTCAACCAGTGATCCAACCAGTGATTCAACCAGTGGTGGTGACGTTGGAGTTGTAGTTGTTATAATCTTAGTAGTAGTTGCTGTTAAAGTATCTATTTTCATTTGTGTTTGTCGAAGAATAATTCGAGTAAGAGATGGATCTAAATCCATTACTTCCATTAGTCCAGATTCGCAATTTATAACTCTCACAATGGATAAATTTCTAAACGACATGGAAAGGGAGAAGCCAATAAGATTCACTGGTCAACAGCTAAGAATTGCAACAGACAACTATTCCAACTTCTTAGGATCAGGTGGATTTGGAACAGTTTACAAAGGAGTTTTCAATAACGGGACGATGGTAGCTGTGAAGGTTCTACGAGGTAGTTCTAACAAGAAAATCGATGAACAATTTATGGCAGAAGTCGGAACAGTTGGTAGAATTCATCACTTCAATCTTGTTAGGCTATTTGGATTTTGCTTTGAAAGAAACTTGATCGCGCTTGTTTATGAGTACATGGGGAATGGATCACTTGACAGGTATTTGTTTCATGAGAAAAATTTGTTGGAATATGAAAAGCTTCATGAGATTGCAATTGGTACAGCAAGAGGAATTGCTTACTTGCATGAAGAGTGTCAACATAGAATAATCCACTATGATATAAAACCGGGAAATATTCTCTTGGATAAGAACTTCTATCCAAAAGTTGCTGATTTTGGTTTGGCCAAACTTTGCAACAGAGAAAATACTCACATAACGATGACCGGAGGAAGAGGGACGCCCGGTTACGCTGCACCGGAGCTTTGGATGCCATTTCCTATAACTCTCAAATGTGATGTTTATAGTTTTGGTATGCTATTGTTTGAAATTGTAGGTAGAAGAAGAAACCTTGAGATTAAGAATACTGATAGCCAAGAATGGTTTCCAATTTGGGTTTGGAAAAAATTTGATGATGGACTATTAGAGGAAGCAATGATAGTTTGTGGAATAGAAGAGAAAAATAGAGAGATTGCTGAGAGAATGATTAAGGTAGCTTTAATGTGTGTTCAATATAGACAAGAATTAAGGCCTATAATGAGTGTTGTGGTGAAAATGTTGGAAGGGTCATTAGAAATTCCAAAGACTTTGAACCCTTTTCAACATTTGATTGATGGAGGTAACTTTGCTACTCAATCAGTGCAAGTGTCAAATACTTACACAACTACTGTTACTTCTTCTTCTGTTAAGGTTAGTGATTCTAGCATTGTGTGTGCTACTCCAATTATGAAGAAGTATGAGATTGAATTAGCATCTAGCACAATGTGA 1287 0.3667 MSTSDPTSDSTSGGDVGVVVVIILVVVAVKVSIFICVCRRIIRVRDGSKSITSISPDSQFITLTMDKFLNDMEREKPIRFTGQQLRIATDNYSNFLGSGGFGTVYKGVFNNGTMVAVKVLRGSSNKKIDEQFMAEVGTVGRIHHFNLVRLFGFCFERNLIALVYEYMGNGSLDRYLFHEKNLLEYEKLHEIAIGTARGIAYLHEECQHRIIHYDIKPGNILLDKNFYPKVADFGLAKLCNRENTHITMTGGRGTPGYAAPELWMPFPITLKCDVYSFGMLLFEIVGRRRNLEIKNTDSQEWFPIWVWKKFDDGLLEEAMIVCGIEEKNREIAERMIKVALMCVQYRQELRPIMSVVVKMLEGSLEIPKTLNPFQHLIDGGNFATQSVQVSNTYTTTVTSSSVKVSDSSIVCATPIMKKYEIELASSTM 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09062 428 SMART serkin_6 90 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09062 428 Pfam Protein kinase domain 94 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09062 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Vifa1g09062 428 PANTHER OS07G0415500 PROTEIN 5 372 - -
Vifa1g09062 428 ProSitePatterns Protein kinases ATP-binding region signature. 96 118 IPR017441 GO:0005524
Vifa1g09062 428 FunFam serine/threonine-protein kinase PBS1-like 63 166 - -
Vifa1g09062 428 Gene3D Transferase(Phosphotransferase) domain 1 167 371 - -
Vifa1g09062 428 SUPERFAMILY Protein kinase-like (PK-like) 73 361 IPR011009 -
Vifa1g09062 428 ProSiteProfiles Protein kinase domain profile. 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09062 428 Gene3D Phosphorylase Kinase; domain 1 64 166 - -
Vifa1g09062 428 FunFam Putative receptor-like protein kinase 167 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09062 Vifa-Chr1 1435858481 1435859866 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09062 79 365 Receptor kinase-like Gene Family AT5G38280 41.497 2.78e-73 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Vifa1g09062 Pkinase 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09062 - - gmx:100803355 630.172