Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09061 ATGTCAACAGCCGCTGATACCACTGCAATTGAGGTTGTTGTAGTAATAGTAGTAATTGTTGTCAAGGTAGCTATTGTGGTTTGTGTGTGTAGGAGAAGACATCAAGTAAGTGGTGGAACAATTATTTCAGATTCACAATTTATAACACTGACAATGGATAAATTTCTAAACGACATGGAAAGGGAGAAGCCAATAAGATTCACTGGTCAACAGCTAAGAATTGCAACAGACAACTATTCCAACTTGTTGGGATCAGGTGGATTTGGAACAGTTTACAAAGGAATTTTCAGTAACGGAACAATCGTAGCTGTGAAGGTTCTACGCGGTAGTTCTAACAAGAAAATCGACGAACAATTCATGGCAGAAGTTGGAACAATTGGTAGAATTCATCACTTTAATCTTGTTAGGCTATTCGGATTTTGCTTTGAACGAAATTTGATCGCGCTTGTTTATGAGTACATGGGGAATGGATCACTTGACAGGTATTTGTTTCATGAAAAAAAGGCGTTAGAATACGAAAAGCTTCATGAGATTGCAATTGGTACAGCAAGAGGCATTGCTTACTTGCATGAAGGGTGTAAACAAAGAATAATCCATTACGATATAAAACCCGGAAATATTCTATTAGACATGAATTTCGACCCTAAAGTTGCTGATTTCGGTTTGGCCAAACATTGCAATAGGGAAAATACTCACATAACGATGACCGGAGGAAGAGGGACGCCCGGTTACGCTGCACCTGAGCTTTGGATGCCATTTCCTATAACTCACAAATGTGATGTTTATAGTTTTGGTATGCTATTATTTGAAATTGTAGGTAGACGAAGAAACCTTGAGATTAAGAATACTGATAGCCAAGAATGGTTTCCAATTTGGGTTTGGAAAAAATTTGATGCTGGACTATTAGAGGAAGCAATGATAGTTTGTGGAATAGAAGAGAAAAATAGAGAGATTGCTGAGAGGATGGTTAAGGTAGCTTTATGGTGTGTTCAATATAGGCCAGAGTTAAGGCCTATAATGAGTGTTGTGGTCAATATGTTGGAAGGTTCATTGGAAATTCCAAAGACTTTGAACCCTTTTCAACATTTGATTGATGGGACTAACTTTGCTACTCAATCACTGCAAGTGTCAAATACTTATACAACTACTGTCCCTTCTACCTCTTCTGTTATGGTAAGTGATTCAAGCATTGTGTGTGCTACTCCTATTATGAGGAAGTATGAGATTGAATTGGCATCTAGCATAGTGTGA 1251 0.3797 MSTAADTTAIEVVVVIVVIVVKVAIVVCVCRRRHQVSGGTIISDSQFITLTMDKFLNDMEREKPIRFTGQQLRIATDNYSNLLGSGGFGTVYKGIFSNGTIVAVKVLRGSSNKKIDEQFMAEVGTIGRIHHFNLVRLFGFCFERNLIALVYEYMGNGSLDRYLFHEKKALEYEKLHEIAIGTARGIAYLHEGCKQRIIHYDIKPGNILLDMNFDPKVADFGLAKHCNRENTHITMTGGRGTPGYAAPELWMPFPITHKCDVYSFGMLLFEIVGRRRNLEIKNTDSQEWFPIWVWKKFDAGLLEEAMIVCGIEEKNREIAERMVKVALWCVQYRPELRPIMSVVVNMLEGSLEIPKTLNPFQHLIDGTNFATQSLQVSNTYTTTVPSTSSVMVSDSSIVCATPIMRKYEIELASSIV 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09061 416 FunFam Putative receptor-like protein kinase 154 355 - -
Vifa1g09061 416 ProSitePatterns Protein kinases ATP-binding region signature. 83 105 IPR017441 GO:0005524
Vifa1g09061 416 Pfam Protein kinase domain 81 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09061 416 ProSiteProfiles Protein kinase domain profile. 77 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09061 416 Gene3D Transferase(Phosphotransferase) domain 1 154 358 - -
Vifa1g09061 416 SMART serkin_6 77 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09061 416 Gene3D Phosphorylase Kinase; domain 1 51 153 - -
Vifa1g09061 416 FunFam serine/threonine-protein kinase PBS1-like 49 153 - -
Vifa1g09061 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Vifa1g09061 416 PANTHER OS07G0415500 PROTEIN 13 359 - -
Vifa1g09061 416 SUPERFAMILY Protein kinase-like (PK-like) 60 348 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09061 Vifa-Chr1 1435620881 1435622247 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09061 67 378 Receptor kinase-like Gene Family AT5G39030 44.099 4.96e-77 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Vifa1g09061 Pkinase 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09061 - - gmx:100803355 647.121