Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09059 ATGAGTAATTTTCATTATCAGTTTCCTAATTCTCCTCCTACCTTTTACTCTTCATCAGACGATTTTAATACACAAGCTCAAAAAACTTTTGACAGATTTGGTGACACTGTTGATTCTTCTATGAAATGGGCTGTAGCAGAATCTATAGTATATGGAATAGTGGTAATAACGGCTGTTATAGCAATAGTGTATGCTATAATTGAGTGCTTGAAGAAAGCAGGAACAGCACTTCCTGCTTACACTCAGATTTCAACCACAGAAAAAGATAATCAAACATTTTCAAACTCAGCATTTCCTTCAACCAGCAAAATCGAAGTGGTTATACCGCAAGATTCATCAAAAGCTGAATTTCCAACCATGGAAAGATTCTTAAGCAACATCAATAGAGAAAAACCAATCCGATTTACACCAGATAACCTCGACGAAATCACCAAAAACTACTCAACCATATTAGGTTCTGGTGCTTTCGGCGTTGTCTTCAAAGGAGAGTTATCGAATGGAGAAAGTGTCGCTGTCAAAGTTCTCAACTGTTTGGATATGGGAATGGAAGAGCAATTCAAAGCCGAAGTTAGCACGATTGGAAGAACTTATCATATCAATTTAGTCAAACTTTATGGATTTTGTTTTCATCATGACACTAGAGCACTTGTTTATGAATGCGTCGAAAATGGTTCGCTAGATAAGTACTTGTTTGGAAGCACGAATCGCGAAGTTGAGTTTCAAAAGCTTCACGAGATTGCTATTGGAACGGCTAAAGGAATCGCGTATTTACACGAGGAATGTCAGCATAGAATAATTCATTATGATATCAAACCAGAAAATGTTCTTCTTGACATGAAATTAGTACCGAAGATCGCTGATTTCGGATTAGCGAAGTTAAGAAATAGAGAAAGTAACAACACTGTTATAAATACTCACTTTAGAGGAACAAGAGGTTACGCTGCACCGGAGTTATGGAAGGCTTATCCGGTGACATATAAGTGTGATGTTTATAGTTTTGGTATTCTTCTGTTTGAAATTGTAGGGAGAAGAAGGCATTTTGATTCTAGCTATAGTGAATCGCAGCAATGGTTTCCGAAGTGGACATGGGAAATGTTTGACAACAATGAATTGGTTGTGATGCTCGCGCTTTGTGGAATTGAAGAGAAAGATAATGAGAGAGCAGAGAGAATGTTGAAGGTTGCTCTATGGTGTGTTCAATATTCCCCAAATGATAGGCCTCTGATGAGTACTGTGGTGAAGATGTTAGAGGGTGAAATAGAAATTTCCCCGCCTCCGTTTCCTTTTCATAATCTTGTTCCTGGTAAACCAAATTTGACATCAGAGGGAAGCCTTGTGGATTCGGACACTACTGCATCGTCGTGGAATGCAGAATCTACTAGAGAACGTTTCGGAACCAAACACAATGCATTTGAGATCGAAAAAGCTACATAG 1434 0.3835 MSNFHYQFPNSPPTFYSSSDDFNTQAQKTFDRFGDTVDSSMKWAVAESIVYGIVVITAVIAIVYAIIECLKKAGTALPAYTQISTTEKDNQTFSNSAFPSTSKIEVVIPQDSSKAEFPTMERFLSNINREKPIRFTPDNLDEITKNYSTILGSGAFGVVFKGELSNGESVAVKVLNCLDMGMEEQFKAEVSTIGRTYHINLVKLYGFCFHHDTRALVYECVENGSLDKYLFGSTNREVEFQKLHEIAIGTAKGIAYLHEECQHRIIHYDIKPENVLLDMKLVPKIADFGLAKLRNRESNNTVINTHFRGTRGYAAPELWKAYPVTYKCDVYSFGILLFEIVGRRRHFDSSYSESQQWFPKWTWEMFDNNELVVMLALCGIEEKDNERAERMLKVALWCVQYSPNDRPLMSTVVKMLEGEIEISPPPFPFHNLVPGKPNLTSEGSLVDSDTTASSWNAESTRERFGTKHNAFEIEKAT 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09059 477 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 41 427 - -
Vifa1g09059 477 ProSitePatterns Protein kinases ATP-binding region signature. 151 173 IPR017441 GO:0005524
Vifa1g09059 477 SMART serkin_6 145 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09059 477 SUPERFAMILY Protein kinase-like (PK-like) 126 417 IPR011009 -
Vifa1g09059 477 FunFam Putative receptor-like protein kinase 221 424 - -
Vifa1g09059 477 Gene3D Phosphorylase Kinase; domain 1 119 220 - -
Vifa1g09059 477 MobiDBLite consensus disorder prediction 440 460 - -
Vifa1g09059 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Vifa1g09059 477 ProSiteProfiles Protein kinase domain profile. 145 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09059 477 MobiDBLite consensus disorder prediction 440 461 - -
Vifa1g09059 477 Gene3D Transferase(Phosphotransferase) domain 1 221 422 - -
Vifa1g09059 477 Pfam Protein kinase domain 149 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09059 Vifa-Chr1 1435357422 1435360031 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09059 134 456 Receptor kinase-like Gene Family AT5G38280 39.339 1.67e-78 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Vifa1g09059 Pkinase 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09059 - - aprc:113852543 691.804