Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09058 ATGAGTGACACAGAAAAGTTTGAGGTTGATAGAAATGGGGATCCTATGAGTTACTCTTCTGGTGTGCCTCCTGATTGGAGCTTTGGTGGTGGGAATCTTGTGAATTCTTCTGCTGGTTTGGTTTCTATTGGTAATTCTATGAGTATCAATAGAGGAGATTTGGTTGGTTCTTCTCCATGTTCCTCTGCCTCTATGGTGGACTCTTTTAGTCCTAACTTTTGGGACCATTCAGGAAATTCCCAAAATTTGGGATTTTGTGAGATGAATGTTCAACATAATGGGAGTTCTTCGAATGCGGTTGGAATTAGAAAAGATGGGTTTGGTTTTGGAAGAGGTGGTCATGATCATGGAAGACTTGAAATGGGTTGGAACCAGGATGGTTCTATGTTGAAAGGGGATGGTTTTTTACCGAATGGACAAGGGGTTTTTCCTCAGAATTTATCTCAGTTTCCAGCTGATTCTGGTTTTATTGAAAGGGCTGCGAGGTTCTCTTGCTTTGGTGGAGGGAATTTTGGTGATGTGATGAGCTCGTATGGGATTCCTCAATCCATGGCTATGTATGTCGGTGGTGCGGTTCATGGAGGTAGAGATGCTCTTGCGGGCGTTGGATTGAAAATAGCAACTGGGGGACAATCACAAGAAAGTAGTGATCCTAATGTAGTTGAAGGAGCTACAAAAGGCGTGTCTCCGTCTATTGAGCAATTGGTTACTAGAGGAAGCCCTTTAATGAATGATAAAAGTGAGACTCGTGCCATGTCTCAAGATGAAGGGAAGCAGGCTCTTGTTCAGAATGCTAATGATTCTGATAGAGGCGAGTCGGGCGATGATGGTGGTGGTGGCGGACAGGGTGGTTCCCCAATGTTGGAGGGTACTACTAGTGGGGAGCCTTCTATTAAAGGATTAAACTCGAAGAAAAGAAAAAGAAGTGGACAGGATGTTGATAACAATAAAGCTAATGAAGTTCAAGAACTACAAAGTGAAGGGGCAAAGGACAACCCTGAGAATCAACAGAAGGGAGACAAACAACCAACTTCGACAAGTAAGGCCAAACAGGGCTCTCAATCTTCTGATCCACCTAAGGATGAATACATACATGTCAGGGCTCGCCGGGGTCAAGCAACAAACAGCCATAGCCTTGCAGAGAGGGTGCGGAGGGAAAAAATAAGTGAGAGGATGAAGTTTCTTCAGGAACTTGTGCCTGGATGCAGCAAGGTCACTGGCAAGGCAGTAATGCTGGACGAAATCATCAACTATGTACAGTCACTTCAACGACAAGTTGAGTTTTTATCTATGAAACTTGCAACGGTAAATCCCCGGCTGGATTTTAATATTGATGGCCTTCTTGCTAAAGATATTCTTCACCAAAGGCCTGGTCCTTCATCTGCATTAGGGTTTCCTTTAGAGATGTCTATGAATTTTCCTCCATTACATCAACCTCAACCAGGGCTGATTCAATCAGTTATTCCAAACATGACAAACCCGTCCGATATCCTTCGTAGAGCTATTCATCCACAATTGAGTGGAGGGTTCAAGGAGCCAAATCAGATGCCTGATATGTGGGAGGATGAGCTTCACAATGTCATACAAATGAGCTTTGCAACAACTGCTCCCACGAGTAATCAAGATGTCGATGGTACTGCTGCATCAAATCAGATGAAAGTTGAACTTTGA 1671 0.4375 MSDTEKFEVDRNGDPMSYSSGVPPDWSFGGGNLVNSSAGLVSIGNSMSINRGDLVGSSPCSSASMVDSFSPNFWDHSGNSQNLGFCEMNVQHNGSSSNAVGIRKDGFGFGRGGHDHGRLEMGWNQDGSMLKGDGFLPNGQGVFPQNLSQFPADSGFIERAARFSCFGGGNFGDVMSSYGIPQSMAMYVGGAVHGGRDALAGVGLKIATGGQSQESSDPNVVEGATKGVSPSIEQLVTRGSPLMNDKSETRAMSQDEGKQALVQNANDSDRGESGDDGGGGGQGGSPMLEGTTSGEPSIKGLNSKKRKRSGQDVDNNKANEVQELQSEGAKDNPENQQKGDKQPTSTSKAKQGSQSSDPPKDEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIDGLLAKDILHQRPGPSSALGFPLEMSMNFPPLHQPQPGLIQSVIPNMTNPSDILRRAIHPQLSGGFKEPNQMPDMWEDELHNVIQMSFATTAPTSNQDVDGTAASNQMKVEL 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09058 556 Pfam Helix-loop-helix DNA-binding domain 375 423 IPR011598 GO:0046983
Vifa1g09058 556 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g09058 556 MobiDBLite consensus disorder prediction 315 358 - -
Vifa1g09058 556 MobiDBLite consensus disorder prediction 300 314 - -
Vifa1g09058 556 MobiDBLite consensus disorder prediction 535 556 - -
Vifa1g09058 556 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 370 441 IPR036638 GO:0046983
Vifa1g09058 556 MobiDBLite consensus disorder prediction 209 361 - -
Vifa1g09058 556 FunFam Basic helix-loop-helix transcription factor 369 441 - -
Vifa1g09058 556 Gene3D - 369 442 IPR036638 GO:0046983
Vifa1g09058 556 MobiDBLite consensus disorder prediction 230 268 - -
Vifa1g09058 556 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 372 422 IPR011598 GO:0046983
Vifa1g09058 556 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 253 480 IPR024097 GO:0006355
Vifa1g09058 556 CDD bHLH_AtBPE_like 362 447 - -
Vifa1g09058 556 SMART finulus 378 428 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09058 Vifa-Chr1 1435020527 1435023025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09058 55 555 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 43.774 2.75e-102 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g09058 HLH 6.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09058 - - tpra:123911592 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09058 1 1435020527 1435023025 Vifa1g09058 1 1435020527 1435023025 ECH