Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09057 ATGGAGTGGGACAGTAATTCCGATCTCAGCGGTGATGAAGACGACGTCGTCTCGTCCTCGTCGTTCCTTCTAAACGACGACGTTGGACCGCTTCCTTTTCCGGTTCTTCAAACGGCGCCGTGTGGGTTTGTCGTCACCGACGCGATCGATCCGGATCATCCTATTATTTACGTCAACGCAGTTTTTGAGATGCTTACTGGTTATCGCGCTGAAGAAGTTCTCGGTCGGAACTGCCGTTTTTTGCAGTGTCGAGGTCCATTCGCTAAGAGAAGGCATCCATTGGTGGACTCATCAGTAATTTCAGAAATTAGAAAATGCATTGACGAAGGGGTAGAATTTCAAGGTGAGTTGCTGAACTTCAGGAAAGATGGATCTCCACTTATGAACAGACTCCGGCTGACACCTATATATGGAGAAGATGATGAAATAACTCATGTCATTGGAATTCAGTTATTCACAGAGGCAAACATTGATCTTGGTCCTGTTCTCGGTTCTACAATTAAGGAATCTGTTAAATCATCTGGTCGGTTTCGTTCTGTGCTTTCCTCACTGCAACCTATTTCAGCGGGGGACCGGAATGTGACCCGTGGAATTTGTGGGTTATTTCAATTAAGTGATGAGGTATTGTCTCTCAAGATACTTGCTCGCTTAACTCCAAGAGATATTGCATCAGTTAGTTCTGTTTGTACGCGATTGTATGAAGTAACAAGAAATGAAGACCTTTGGAGGATGGTATGCCAAAATGCATGGGGTAGTGAAACTACCCGTGTTTTGGAGACTGTTCCTGGTGCAAGGAGGCTTGGATGGGGTCGACTAGCAAGGGAACTGACCACTCTTGAAGCAGCAGCATGGAGGAAACTGACTGTTGGAGGTGGTGTTGAACCGTCACGCTGCAATTTTAGTGCTTGTGCAGTTGGGAATAGAGTTGTCCTATTTGGTGGTGAAGGGGTTAATATGCAACCCATGAATGACACCTTTGTATTGGATCTCAATTCTAATAATCCCGAATGGCAACATGTCCACGTTAGCTCTCCTCCCCCTGGTCGGTGGGGCCATACACTTTCTTGTGTTAATGGTTCTCGTTTGGTTGTATTTGGAGGCTGTGGAACACAGGGTTTGCTCAATGATGTGTTTGTTCTGGACTTGGATGCAACCCCTCCAACTTGGCGTGAAATTTCGGGATTGGCACCTCCACTTCCAAGATCATGGCACAGCTCTTGTACTCTTGATGGTACTAAGTTGATAGTTTCTGGTGGCTGTGCTGATTCGGGAGTACTTTTGAGTGATACTTTTCTCCTTGATATGTCAATGGAAAACCCTATCTGGAGGGAGATACCAGTGACATGGACACCACCTTCCCGTCTGGGCCACACTCTGTCTGTTTATGGTGGTAGGAAAATTCTGATGTTTGGGGGTTTGGCCAAGAGTGGTCCCCTGCGTTTCCGGTCAAGTGATGTGTTCACTATGGATTTAAGTGAGGAGGAACCGTGCTGGAGATGTGTAACGGGGAGTGGAATGCCTGGTGCTGGCAATCCTGGAGGCATAGCTCCTCCTCCTAGACTTGATCACGTGGCCGTTAGCCTTCCAGGTGGTAGAATTTTAATTTTTGGGGGTTCTGTTGCAGGCCTTCATTCTGCCTCCCAGCTTTACATACTCGATCCAACCGATGAGAAGCCTACATGGAGAATCTTAAATGTACCCGGGCGCCCTCCAAGATTTGCTTGGGGACACAGTACATGTGTTGTTGGGGGGACAAGAGCTATTGTTCTGGGCGGTCAAACCGGGGATGAATGGATGCTAAGTGAACTGCATGAACTTTCTCTGGCAAATTCTGTCATCTAG 1842 0.4718 MEWDSNSDLSGDEDDVVSSSSFLLNDDVGPLPFPVLQTAPCGFVVTDAIDPDHPIIYVNAVFEMLTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSSVISEIRKCIDEGVEFQGELLNFRKDGSPLMNRLRLTPIYGEDDEITHVIGIQLFTEANIDLGPVLGSTIKESVKSSGRFRSVLSSLQPISAGDRNVTRGICGLFQLSDEVLSLKILARLTPRDIASVSSVCTRLYEVTRNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGGVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSNNPEWQHVHVSSPPPGRWGHTLSCVNGSRLVVFGGCGTQGLLNDVFVLDLDATPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDMSMENPIWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGDEWMLSELHELSLANSVI 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09057 613 Gene3D - 274 374 IPR015915 GO:0005515
Vifa1g09057 613 Gene3D PAS domain 33 161 - -
Vifa1g09057 613 FunFam Putative LOV domain-containing protein 479 612 - -
Vifa1g09057 613 CDD F-box_AtADO-like 200 246 - -
Vifa1g09057 613 Pfam F-box-like 209 247 IPR001810 GO:0005515
Vifa1g09057 613 SUPERFAMILY PYP-like sensor domain (PAS domain) 39 150 IPR035965 -
Vifa1g09057 613 Pfam Kelch motif 454 505 IPR011498 GO:0005515
Vifa1g09057 613 Pfam Kelch motif 521 568 IPR011498 GO:0005515
Vifa1g09057 613 FunFam Adagio protein 1 33 161 - -
Vifa1g09057 613 CDD PAS 39 149 IPR000014 -
Vifa1g09057 613 ProSiteProfiles PAS repeat profile. 48 110 IPR000014 -
Vifa1g09057 613 SUPERFAMILY F-box domain 193 262 IPR036047 GO:0005515
Vifa1g09057 613 Pfam PAS domain 40 149 IPR000014 -
Vifa1g09057 613 FunFam Adagio protein 1 198 245 - -
Vifa1g09057 613 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 31 609 - -
Vifa1g09057 613 SMART pac_2 114 155 IPR001610 -
Vifa1g09057 613 NCBIfam PAS domain S-box protein 49 149 IPR000014 -
Vifa1g09057 613 Gene3D - 200 245 - -
Vifa1g09057 613 Gene3D - 398 612 IPR015915 GO:0005515
Vifa1g09057 613 SUPERFAMILY Kelch motif 284 501 IPR015915 GO:0005515
Vifa1g09057 613 ProSiteProfiles SRCR domain profile. 215 258 IPR001190 GO:0005044|GO:0016020
Vifa1g09057 613 FunFam Putative LOV domain-containing protein 274 478 - -
Vifa1g09057 613 Pfam Galactose oxidase, central domain 359 408 - -
Vifa1g09057 613 SUPERFAMILY Kelch motif 514 599 IPR015915 GO:0005515
Vifa1g09057 613 Pfam Galactose oxidase, central domain 297 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09057 Vifa-Chr1 1434907813 1434915204 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09057 35 151 AGC Kinase Gene Family AT5G58140 39.316 1.55e-20 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09057 K12115 - gmx:100802828 1124