Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09026 ATGAAAGCAGGAAAAGTGAACCACGAAGAAGATGAGTACGATGAGGAAGACTTCAATTCTTCCAAAAAACAAGGCACTTCCTCTGCCCCTAACACCAATAAAGCAGATGGAAAAGCTACTGATAAAGCTAGTGTAATAAGATCGAAACATTCTGTAACCGAGCAACGAAGAAGAAGCAAGATAAATGAGAGATTTCAAATATTGAGGGATCTCATACCTCAATGTGATCAAAAGAGGGACACAGCATCATTCTTGTTAGAGGTGATCGAGTATGTTCAGTACTTACAGGAGAAGGTGCAAAAATATGAAGGCTCGTATCAAGGTTGGAGTCAAGAGCCGTCAAAGTTGATGCCATGGAGAAATAGCCATTGGCGTGTCCAAAACTTTGTTGGTCAGCCTCCAGCTGTAAAGAATGGTTCAGTGGAGAGGCAACCCGATTTAGCAAGCAAGGGAATTCCTCTGCCAGTACCTATGCATGCAAACATGTCTGTTCCTGTCAGAAGTGATGGTGTGTTTTCCCATCCTCTTCAGGGAACTGTTTCCGATGCGCAATCAGCTGAGTGTCCCACAACTAGTGAACAACTGAACCAGCGGGATGAACTTACAATTGAAGGAGGGACAGTCAGCATCTCGAGTGTATACTCCCAAGAGTTGTTGAACAATCTAACTCAGGCGCTACAGAGTGCTGGGTTAGATCTCTCAAAGGCTAACATTTCAGTGCAAATTGATCTTGGGAAGCGTGCAAACAAAGAGCCTAGTGGCACAACCTCTTCTCCGAAGGATCATGATAACCCTCTTTCTGGCAATCAAAACATTGCACATTTCAGAGATGTTGACATTAGAGAAGACTCAAGTCAAGCTCAGAAAAGAATGAAAACATACAAGTGA 888 0.4324 MKAGKVNHEEDEYDEEDFNSSKKQGTSSAPNTNKADGKATDKASVIRSKHSVTEQRRRSKINERFQILRDLIPQCDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWSQEPSKLMPWRNSHWRVQNFVGQPPAVKNGSVERQPDLASKGIPLPVPMHANMSVPVRSDGVFSHPLQGTVSDAQSAECPTTSEQLNQRDELTIEGGTVSISSVYSQELLNNLTQALQSAGLDLSKANISVQIDLGKRANKEPSGTTSSPKDHDNPLSGNQNIAHFRDVDIREDSSQAQKRMKTYK 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09026 295 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 95 IPR011598 GO:0046983
Vifa1g09026 295 MobiDBLite consensus disorder prediction 40 58 - -
Vifa1g09026 295 MobiDBLite consensus disorder prediction 174 193 - -
Vifa1g09026 295 Gene3D - 42 116 IPR036638 GO:0046983
Vifa1g09026 295 MobiDBLite consensus disorder prediction 250 271 - -
Vifa1g09026 295 Pfam Helix-loop-helix DNA-binding domain 47 96 IPR011598 GO:0046983
Vifa1g09026 295 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 117 IPR036638 GO:0046983
Vifa1g09026 295 MobiDBLite consensus disorder prediction 22 38 - -
Vifa1g09026 295 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 5 140 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vifa1g09026 295 MobiDBLite consensus disorder prediction 1 58 - -
Vifa1g09026 295 MobiDBLite consensus disorder prediction 244 295 - -
Vifa1g09026 295 FunFam BHLH domain class transcription factor 43 115 - -
Vifa1g09026 295 SMART finulus 51 101 IPR011598 GO:0046983
Vifa1g09026 295 CDD bHLH_AtBIM_like 44 120 - -
Vifa1g09026 295 MobiDBLite consensus disorder prediction 275 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09026 Vifa-Chr1 1433295706 1433298280 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09026 1 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 52.160 3.48e-101 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g09026 HLH 2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09026 - - gmx:100816055 468.388