Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09025 ATGAAAGCAGGAAAAGTGAACCACGAAGAAGATGAGTACGATGAGGAAGACTTCAATTCTTCCAAAAAACAAGGCACTTCCTCTGCCCCTAACACCAATAAAGATGGAAAAGCTACTGATAAAGCTAGTGTAATAAGATCGAAACATTCTGTAACCGAGCAACGAAGAAGAAGCAAGATAAATGAGAGATTTCAAATATTGAGGGATCTCATACCTCAATGTGATCAAAAGAGGGACACAGCATCATTCTTGTTAGAGGTGATCGAGTATGTTCAGTACTTACAGGAGAAGGTGCAAAAATATGAAGGCTCGTATCAAGGTTGGAGTCAAGAGCCGTCAAAGTTGATGCCATGGAGAAATAGCCATTGGCGTGTCCAAAACTTTGTTGGTCAGCCTCCAGCTGTAAAGAATGGTTCAGTGGAGAGGCAACCCGATTTAGCAAGCAAGGGAATTCCTCTGCCAGTACCTATGCATGCAAACATGTCTGTTCCTGTCAGAAGTGATGGTGTGTTTTCCCATCCTCTTCAGGGAACTGTTTCCGATGCGCAATCAGCTGAGTGTCCCACAACTAGTGAACAACTGAACCAGCGGGATGAACTTACAATTGAAGGAGGGACAGTCAGCATCTCGAGTGTATACTCCCAAGAGTTGTTGAACAATCTAACTCAGGCGCTACAGAGTGCTGGGTTAGATCTCTCAAAGGCTAACATTTCAGTGCAAATTGATCTTGGGAAGCGTGCAAACAAAGAGCCTAGTGGCACAACCTCTTCTCCGAAGGATCATGATAACCCTCTTTCTGGCAATCAAAACATTGCACATTTCAGAGATGTTGACATTAGAGAAGACTCAAGTCAAGCTCAGAAAAGAATGAAAACATACAAGTGA 885 0.4316 MKAGKVNHEEDEYDEEDFNSSKKQGTSSAPNTNKDGKATDKASVIRSKHSVTEQRRRSKINERFQILRDLIPQCDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWSQEPSKLMPWRNSHWRVQNFVGQPPAVKNGSVERQPDLASKGIPLPVPMHANMSVPVRSDGVFSHPLQGTVSDAQSAECPTTSEQLNQRDELTIEGGTVSISSVYSQELLNNLTQALQSAGLDLSKANISVQIDLGKRANKEPSGTTSSPKDHDNPLSGNQNIAHFRDVDIREDSSQAQKRMKTYK 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09025 294 FunFam BHLH domain class transcription factor 42 114 - -
Vifa1g09025 294 CDD bHLH_AtBIM_like 43 119 - -
Vifa1g09025 294 MobiDBLite consensus disorder prediction 274 288 - -
Vifa1g09025 294 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 116 IPR036638 GO:0046983
Vifa1g09025 294 SMART finulus 50 100 IPR011598 GO:0046983
Vifa1g09025 294 MobiDBLite consensus disorder prediction 22 38 - -
Vifa1g09025 294 MobiDBLite consensus disorder prediction 249 270 - -
Vifa1g09025 294 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 5 139 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vifa1g09025 294 MobiDBLite consensus disorder prediction 39 57 - -
Vifa1g09025 294 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 94 IPR011598 GO:0046983
Vifa1g09025 294 Gene3D - 40 115 IPR036638 GO:0046983
Vifa1g09025 294 MobiDBLite consensus disorder prediction 1 57 - -
Vifa1g09025 294 MobiDBLite consensus disorder prediction 243 294 - -
Vifa1g09025 294 Pfam Helix-loop-helix DNA-binding domain 46 95 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09025 Vifa-Chr1 1433295706 1433298280 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09025 1 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 53.231 1.75e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g09025 HLH 2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09025 - - gmx:100816055 462.225