Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09022 ATGGCTGCTATCTCACTAGAACAGATCAAGAATGAGTCGGTTGATTTGGAAAAAATCCCAATTGAGGAAGTGTTTGCGCAATTGAAATGTACCCGAGAAGGTTTGTCCTCTACAGAAGGAGAAAGCAGGATTCAAATATTTGGTCCTAACAAGCTTGAAGAGAAAAAGGAGAGCAAATTTCTCAAGTTTCTTGGGTTTATGTGGAATCCCTTATCATGGGTGATGGAAGCTGCAGCTATAATGGCGATTGCTCTTGCAAATGGTGGAGGGCAGCCTCCGGATTGGCAAGATTTTGTGGGAATTGTGTGCTTGTTGGTTATCAATTCAACTATCAGTTTCATTGAAGAAAACAATGCTGGAAATGCTGCTGCTGCTCTTATGGCAGGTCTTGCTCCTAAGACGAAGGTTCTTAGAGATGGTAAATGGAGTGAGCAAGAAGCTGCAATTCTCGTTCCAGGAGACATCATTAGTATCAAGCTTGGTGACATCATACCAGCCGATGCTCGTCTTCTAGAAGGTGATCCTTTAAAGGTTGACCAAGCAGCATTAACAGGAGAATCACTTCCGGTCACTAGACATCCAGGACAAGAAGTTTTCTCAGGCTCAACTTGCAAACAAGGAGAAATTGAAGCTGTTGTTATTGCAACCGGTGTCCACACATTCTTCGGAAAAGCAGCACATTTGGTTGACAATACAAACAATGTTGGACATTTCCAAATGGTTCTCAAATCAATTGGAAACTTTTGTATCTGTTCCATTGCAGTTGGTATGTTGGCTGAGATTATAGTCATGTATCCAATTCAACATCGCAAATATCGCGATGGTATTGACAACCTGTTAGTCCTTTTGATCGGTGGAATTCCTATTGCTATGCCAACTGTTTTGTCTGTGACAATGGCTATTGGTTCTCATAAGCTTTCTCAGCAAGGTGCTATTACAAAAAGAATGACGGCCATTGAGGAAATGGCTGGTATGGACGTTCTTTGCAGTGACAAGACAGGAACACTTACGCTTAACAAATTGAGTGTTGATAGGAACTTGATTGAAGTTTTTATTAAGGGTATGGATAAGGAACATGTGATTCTTCTTGCTGCTAGGGCTGCTAGGACTGAAAATCAGGATGCTATTGATGCTGCTATTGTTGGAATGCTTGCTGACCCTAAAGAGGCGAGGGCCGGGATAACAGAGGTGCATTTCTTGCCATTCAATCCAAATGATAAGAGAACTGCTTTGACATACATTGATAATAAGGATGGAACCTGGCATAGAGCTAGCAAAGGTGCTCCTGAGCAGATTATAGAGTTGTGTAACATGAGAGAAGATGCTCAAAAGAAGATTCATTCCATGATTGAAAAGTTCGCAGAAAGAGGGCTACGTTCACTTGGTGTTGCTAGACAGGAAGTTCCTGAGAAAACAAAGGAAAGTGCTGGTGCTCCATGGCAGTTTGTTGGTTTGTTGTCGGTGTTTGATCCTCCTAGGCATGACAGTGCTGAGACCATTAGACAAGCTCTTAACCTCGGTGTTAATGTTAAGATGATTACAGGTGATCAACTTGCCATAGCTAAGGAAACTGGTAGGAGACTTGGTATGGGAACCAATATGTATCCTTCTGCTACATTGCTTGGTCTAGACAAAGATTCAAGTGTGGCTTCAATGCCAGTTGAAGAGCTTATTGAGAAGGCAGATGGATTTGCCGGAGTTTTCCCAGAACATAAATATGAAATTGTGAAGAAGCTACAAGAGAGGAAGCACATTTGTGGAATGACTGGAGATGGTGTGAATGATGCTCCTGCATTGAAGAAAGCTGATATTGGAATTGCTGTTGCCGATGCTACTGATGCTGCAAGAGGCGCTTCTGATATAGTCTTGACAGAACCTGGTTTGAGTGTTATCATTAGTGCAGTCTTGACAAGTAGAGCTATTTTCCAAAGAATGAAAAACTACACGATCTATGCAGTGTCTATCACTATCCGTATAGTGTTTGGATTTATGTTTATTGCATTGATATGGAAGTTTGATTTCTCTCCATTCATGATTTTGATTATTGCCATTTTAAACGATGGAACCATCATGACAATTTCAAAGGATAGGGTTAAGCCATCTCCATTGCCCGATAGCTGGAAACTGAAAGAAATATTTGCTACTGGAGTCATGCTTGGAGGTTACCAGGCATTGATGACTGTGATATTCTTTTGGATAGTGCAAGGCACTAAATTCTTCCCTGACAGATTTGGAGTTAGACATATTCATGACAATCCCGATGAATTGACAGCTGCTTTGTATCTACAAGTTAGTATAGTCAGTCAGGCTTTGATCTTCGTGACTCGTTCGCGTAGCTGGTCTTATGTCGAACGCCCCGGGATGCTGTTACTGGGTGCTTTCCTCATTGCTCAACTGATTGCTACATTAATAGCAGTATATGCCAACTGGGCCTTTGCAAGAATCCAAGGAATTGGTTGGGGTTGGGCCGGAGTCATTTGGCTCTATAGTATCATCTTCTATATTCCTCTTGACATCATCAAATTCGCCACTCGCTATTTCTTGAGTGGCAAAGCTTGGTCAAATCTAGAAAACAAGACTGCCTTCACTACCAAGAAAGACTATGGTAAAGGAGAGAGAGAAGCTCAATGGGCTCATGCTCAAAGGACACTTCATGGCCTCGAACCACCAGAAAGTTCTGGTATCTTCCATGAGAAGAACAGTTATAGAGAATTGTCCGAGATTGCCGAGCAGGCCAAGAGACGCGCTGAAGTTGCTAGGCTTCGTGAACTTCATACTCTTAAAGGACATGTTGAATCTGTTGTGAAGCTCAAAGGGTTGGACATTGACACCATACAACAACATTACACTGTGTAA 2856 0.4205 MAAISLEQIKNESVDLEKIPIEEVFAQLKCTREGLSSTEGESRIQIFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGQPPDWQDFVGIVCLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIISIKLGDIIPADARLLEGDPLKVDQAALTGESLPVTRHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDNTNNVGHFQMVLKSIGNFCICSIAVGMLAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDRNLIEVFIKGMDKEHVILLAARAARTENQDAIDAAIVGMLADPKEARAGITEVHFLPFNPNDKRTALTYIDNKDGTWHRASKGAPEQIIELCNMREDAQKKIHSMIEKFAERGLRSLGVARQEVPEKTKESAGAPWQFVGLLSVFDPPRHDSAETIRQALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSATLLGLDKDSSVASMPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFSPFMILIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVMLGGYQALMTVIFFWIVQGTKFFPDRFGVRHIHDNPDELTAALYLQVSIVSQALIFVTRSRSWSYVERPGMLLLGAFLIAQLIATLIAVYANWAFARIQGIGWGWAGVIWLYSIIFYIPLDIIKFATRYFLSGKAWSNLENKTAFTTKKDYGKGEREAQWAHAQRTLHGLEPPESSGIFHEKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09022 951 PRINTS H+-transporting ATPase (proton pump) signature 446 464 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g09022 951 PRINTS H+-transporting ATPase (proton pump) signature 589 605 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g09022 951 PRINTS H+-transporting ATPase (proton pump) signature 561 577 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g09022 951 PRINTS H+-transporting ATPase (proton pump) signature 620 645 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g09022 951 PRINTS H+-transporting ATPase (proton pump) signature 761 782 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g09022 951 Gene3D - 94 816 - -
Vifa1g09022 951 Coils Coil 902 922 - -
Vifa1g09022 951 FunFam Plasma membrane ATPase 132 216 - -
Vifa1g09022 951 Pfam Cation transporter/ATPase, N-terminus 18 81 IPR004014 -
Vifa1g09022 951 PANTHER CALCIUM-TRANSPORTING ATPASE 18 883 - -
Vifa1g09022 951 Gene3D - 326 626 IPR023214 -
Vifa1g09022 951 SFLD C1.7: P-type atpase like 311 640 - -
Vifa1g09022 951 FunFam Plasma membrane ATPase 341 489 - -
Vifa1g09022 951 SUPERFAMILY HAD-like 325 636 IPR036412 -
Vifa1g09022 951 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Vifa1g09022 951 Gene3D - 132 216 - -
Vifa1g09022 951 Gene3D - 900 951 - -
Vifa1g09022 951 SUPERFAMILY Calcium ATPase, transmembrane domain M 15 849 IPR023298 -
Vifa1g09022 951 Pfam E1-E2 ATPase 131 308 - -
Vifa1g09022 951 SFLD p-type atpase 311 640 IPR044492 -
Vifa1g09022 951 FunFam Plasma membrane ATPase 482 637 - -
Vifa1g09022 951 NCBIfam plasma-membrane proton-efflux P-type ATPase 34 807 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vifa1g09022 951 Gene3D - 341 489 IPR023299 GO:0000166
Vifa1g09022 951 NCBIfam HAD-IC family P-type ATPase 564 679 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g09022 951 NCBIfam HAD-IC family P-type ATPase 101 347 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g09022 951 CDD P-type_ATPase_H 34 842 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vifa1g09022 951 Pfam haloacid dehalogenase-like hydrolase 325 603 - -
Vifa1g09022 951 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Vifa1g09022 951 ProSitePatterns E1-E2 ATPases phosphorylation site. 331 337 IPR018303 -
Vifa1g09022 951 FunFam ATPase 4 plasma membrane-type 574 816 - -
Vifa1g09022 951 PRINTS P-type cation-transporting ATPase superfamily signature 589 608 - -
Vifa1g09022 951 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Vifa1g09022 951 PRINTS P-type cation-transporting ATPase superfamily signature 612 624 - -
Vifa1g09022 951 PRINTS P-type cation-transporting ATPase superfamily signature 484 495 - -
Vifa1g09022 951 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Vifa1g09022 951 PRINTS P-type cation-transporting ATPase superfamily signature 506 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09022 Vifa-Chr1 1432576516 1432582391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09022 5 951 Primary Pumps ATPases AT4G30190 83.486 0.0 1611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09022 K01535 - gmx:100804422 1680.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04475 4 1413157119 1413163495 Vifa1g09022 1 1432576516 1432582391 PCT