Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09002 ATGATTCATGCTATTGTAGTCAAATTTCCAAGAGATGTTTTGGACGAGCAGTCAAAGACATTTTTTCTCCATTTGGTAGCTTGCTTGGCAAATGATAATGATGATATTGTTTGTTCTATGAGTGGGGCTACTATAAAGAAGCTCATTGGTTCTGTTAGTTCCAGTGCACTTAAACCTATTCTTAAATATGCTCTTTCTTGGTATTCAGGTGACAAGCAGCAACTCTGGGCTGCTGCCACACAGGTTTTGGGGTTACTGATTGAGGTAGTAAAGAATGAATTTCTTAGTCATATAGACTACATTTTGCCGGTGACTCATTGCATCTTGCAGTCTGCCATACATGTAGTCACAAACCGGCAAAAGAGCTTTGAGTCCGAATCCAACCTTCCACTTTGGAAGGAGGCGTACTATTCTTTAGTTATGTTAGGCAAGATAATTCATCAATTCCATGACTTATGCTTTACAAAGGAACTAGAGGGTATATGGGAAGCAATATGTGAGATGTTGTTGCACCCACACTCTTGGTTACGCAACAAATCGGGTCGTCTCATAGCTCTATACTTTGCACGTGTAACAGATAACAACAGAGAAAATCATCAAAGCTCCTTAAATAGTCATTTTATGATGAGTCCTAGTAGATTATATTTAATAGCCACTTCTCTTTGCTGCCAATTGAAAATGCCACTCATAGATGAGGTTGACAGCATCCTGATGACCCAGAATATTGTCTTTGCTTTTTTTGCTTTAATGAGGCAAACTGCCAGCATAGATCCATCTGCATTCTGGTCTACTCTTGAGCAAAATAAGAAGAATCGGTTTCTCAAAGCTTTTGACTTGATTAATGCAAGAAAAGGAAGAATGATGTTCATGTCTTCATCACTTACCTCCTCCGTATGTGAAGGAGGTAGTCAAGTTAATGTTAAGAACACCCAACAGATACTTGTATCGTTATTGCTCAAGAAGATGGGCAAAATTGCTCTTCAAACAGATGCTATTCAGATGGAAATAGTCTTCAATAGTTTTGGTAAACTTATGGCACAGATAGAGATGAGCATGGACTATGCACACATAGTCCTGATACCTCTGTATAAAGTTTCTGAAGGATTTGCTGGAAAAGTGGTAGCTGGTAATCTGAAAAAGTTGGCAGAAGACACCTGTGGGAAAATAGAGAATATTATTGGTACTCAAAACTTTGTCCAAGTTTATAACCTTATCAGGAAGAACCTGAGTTTGAAAAGAAATAAGAGGAAGCCTAAAACGGGAACTCTTCCTCAATCACCTTACGCTACTGATCCAGCATGGTCAGACTCCCTTTGGAAAATTCTGCAGGTTACATGGGATGATCCTGATTTAGTTACAAATACGAAGAGGCTGAACCCCCCTAGCAATTTTCTAAAAGTCCGTTAA 1407 0.3895 MIHAIVVKFPRDVLDEQSKTFFLHLVACLANDNDDIVCSMSGATIKKLIGSVSSSALKPILKYALSWYSGDKQQLWAAATQVLGLLIEVVKNEFLSHIDYILPVTHCILQSAIHVVTNRQKSFESESNLPLWKEAYYSLVMLGKIIHQFHDLCFTKELEGIWEAICEMLLHPHSWLRNKSGRLIALYFARVTDNNRENHQSSLNSHFMMSPSRLYLIATSLCCQLKMPLIDEVDSILMTQNIVFAFFALMRQTASIDPSAFWSTLEQNKKNRFLKAFDLINARKGRMMFMSSSLTSSVCEGGSQVNVKNTQQILVSLLLKKMGKIALQTDAIQMEIVFNSFGKLMAQIEMSMDYAHIVLIPLYKVSEGFAGKVVAGNLKKLAEDTCGKIENIIGTQNFVQVYNLIRKNLSLKRNKRKPKTGTLPQSPYATDPAWSDSLWKILQVTWDDPDLVTNTKRLNPPSNFLKVR 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09002 468 Gene3D - 1 186 IPR011989 -
Vifa1g09002 468 SUPERFAMILY ARM repeat 3 191 IPR016024 -
Vifa1g09002 468 PANTHER UNCHARACTERIZED 1 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09002 Vifa-Chr1 1428683704 1428685110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09002 430 460 B3 DNA Binding Superfamily AT4G30080 56.250 5.12e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09002 K14772 - gmx:100811612 565.844