Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08993 ATGCTAAAGAAGAAGGTGGAGTCACAGCCTTTCAATACCAGGGACGTTGAGAGGATGAAAAGAGAGTTGCAGGCTGCTGAGAGGGATGCTGGAGAGGCTGAACTTGCTAGGAATGATTGGGAGGAAAAGTGTTGGGAGCTTGACCGTACTCTCGCAAATAACATCAGAGACTTAGAACCTATCACCAGGGATTGTAACCAAGCCCTTAAGAGGTTGAAGATTGGTAATGACATTCAATATGTGTTGAATCCCAAGGGAACCACGCCTGCTGAGATCATGGGCATATGCTGCTGCCGTACAGTGAATCAAAACTATGCAAATATTCTTTTGATGCTTTTACGTCTCCGTCAGGCTTGTGATCACCCACTTCTTGTTAAAGAATACAATTCTGATCCAGTTGGAAAAGATTCTGTTGAAATGGCAAAAAGGCTTCCAAAAGAGATGCTGATAAATCTGTTTAATAGTTTGGAAACAACTTCCGCTATATGTTTTGTCTGCAATAGGCCAGAGAATAAGCTTGGAGATGATGAAACGTGGGATAGGGCTGAAAGTGCTCTCAAGGAGGCTTTGGATGAGTGTGGCAAAGGGAATGTGTTTGTTAAGAACTTAGCGGAATCGATAGATAATGTGGGACTGCATGATTTATTTCAAGAATATGGGAATATTTTGTCTAGCAAAATTGTCATCTCTGAAGATGAGAAGAGCAAAGGGTTTGGTTATATACAGTTTGGTTCAGAGGAGTCTGCAAATGATGCTATCCAGAAAATGAATGGCTCTACTGTGAGAGATAAGCAGATATATGTTGGGAAATTTATCAGAAAAAGTGAGCGCTCTTTGCCTGAACCTGATGCCAAATATACAAACTTGTACGTTAAGAATTTGGACCCAGATATTACCGAAGCACTTCTTAAAGAAAAGTTCTCATCTTTTGGAAAAATTCTTAGCTTGGCTATTGTAAAGGATGAGAAGGGGTTGTCAAAAGGTTTTGGATTTATGAACTATGAAAACCCGGATGATGCAAGACGAGCAACGGAAGCAATGAATGGATCACAATTTGGTTCAAAGAACCTGTATGTTGCAAGAGCACAAAAAAAGGTTGAACGTGAGAAGATCTTGCATCAGTGGTTTGCAGAAAGATGCATGGAGAAAAACTTGAAATACAAGGGATCAAACATTTATGTGAAGAACATTAATGATAGTGTTAGTGACGAAGAACCTAAAAAGTCAGTTTAG 1233 0.3998 MLKKKVESQPFNTRDVERMKRELQAAERDAGEAELARNDWEEKCWELDRTLANNIRDLEPITRDCNQALKRLKIGNDIQYVLNPKGTTPAEIMGICCCRTVNQNYANILLMLLRLRQACDHPLLVKEYNSDPVGKDSVEMAKRLPKEMLINLFNSLETTSAICFVCNRPENKLGDDETWDRAESALKEALDECGKGNVFVKNLAESIDNVGLHDLFQEYGNILSSKIVISEDEKSKGFGYIQFGSEESANDAIQKMNGSTVRDKQIYVGKFIRKSERSLPEPDAKYTNLYVKNLDPDITEALLKEKFSSFGKILSLAIVKDEKGLSKGFGFMNYENPDDARRATEAMNGSQFGSKNLYVARAQKKVEREKILHQWFAERCMEKNLKYKGSNIYVKNINDSVSDEEPKKSV 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08993 410 Coils Coil 16 43 - -
Vifa1g08993 410 SMART rrm1_1 197 269 IPR000504 GO:0003723
Vifa1g08993 410 SMART rrm1_1 288 360 IPR000504 GO:0003723
Vifa1g08993 410 PANTHER RNA BINDING PROTEIN 142 407 - -
Vifa1g08993 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 266 IPR000504 GO:0003723
Vifa1g08993 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 289 357 IPR000504 GO:0003723
Vifa1g08993 410 SUPERFAMILY RNA-binding domain, RBD 195 277 IPR035979 GO:0003676
Vifa1g08993 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 364 IPR000504 GO:0003723
Vifa1g08993 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 273 IPR000504 GO:0003723
Vifa1g08993 410 FunFam Polyadenylate-binding protein 190 277 - -
Vifa1g08993 410 Gene3D - 167 275 IPR012677 -
Vifa1g08993 410 SUPERFAMILY RNA-binding domain, RBD 279 369 IPR035979 GO:0003676
Vifa1g08993 410 Gene3D - 276 380 IPR012677 -
Vifa1g08993 410 FunFam Polyadenylate-binding protein 278 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08993 Vifa-Chr1 1428101167 1428103604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08993 194 408 Eukaryotic Initiation Factors Gene Family AT2G36660 56.279 7.39e-79 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08993 K13126 - gmx:100798828 324.709