Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08986 ATGTCGTGGAAAACTTACGTCGATGATCACCTTCTCTGTGAAATCGAAGGTAACCATCTCACTCATGCAGCTATCCTCGGTCAAGACGGCAGCGTTTGGGCTCAGAGTGCCAATTTCCCTCAGTTTAAGCCTGAGGAAATTACTGCTATCAATAATGATTTTGCTGAGCCTGGAACACTTGCTCCAACTGGATTACACATTGGTGGAACTAAATATATGGTGATTCAAGGTGAACCTGGAGCTGTTATTCGAGGGAAGAAGGGTCTTGGTGGTGTTACTGTTAAGAAGACCACTCTGGCTCTGGTCATTGGTATTTATGATGAACCAATGACCCCTGGTCAGTGCAACATGGTAGTTGAAAGGCTTGGTGATTATCTCGTTGAACAGGGTCTCTAA 396 0.4495 MSWKTYVDDHLLCEIEGNHLTHAAILGQDGSVWAQSANFPQFKPEEITAINNDFAEPGTLAPTGLHIGGTKYMVIQGEPGAVIRGKKGLGGVTVKKTTLALVIGIYDEPMTPGQCNMVVERLGDYLVEQGL 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08986 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Vifa1g08986 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Vifa1g08986 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Vifa1g08986 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Vifa1g08986 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Vifa1g08986 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Vifa1g08986 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Vifa1g08986 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Vifa1g08986 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Vifa1g08986 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Vifa1g08986 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Vifa1g08986 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Vifa1g08986 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Vifa1g08986 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Vifa1g08986 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Vifa1g08986 131 FunFam Profilin 1 131 - -
Vifa1g08986 131 CDD PROF 2 130 IPR005455 GO:0003779
Vifa1g08986 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779
Vifa1g08986 131 SMART prof_2 1 131 IPR005455 GO:0003779
Vifa1g08986 131 Pfam Profilin 1 130 IPR005455 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08986 Vifa-Chr1 1425987135 1425987530 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08986 1 131 Cytoskeleton Gene Families AT4G29350 78.626 1.36e-76 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08986 K05759 - gmx:100127411 241.891