Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08974 ATGAAGAAAACTCACATAATAGACTCATCTAGATTTGTAATTATCTTTTTAGTTCCACAACTCTTCTTCTATTTCTTCATTCATTTAACATCTTGTGACAAAATCCTCCTTAACTGTGGTTCATCCGGATCATCAACATTCAATGGTCTAAACTGGATAGGAGACATTGAAACAAGTTTCTTGCAAACATCATATGATACAACTTCATCAACAACACTCTTACTCTCAAACACAAACAAAGTAGCACCAGAAGTTCCATACTCAACAGCAAGAATAGTTCATCATTCTCCATTAACCTACTCAATCCCCTTCTCTTCTCCTGGCCTTAAATTCATTCGTTTATACTTTCTCTCAACTTCATATTTACCAACATACACTTCCAACTCCAACTCCAACTCCTTTTTTTCAGTCAAATCGGGTCCATACACTCTTGTCGACAATTTCAATCCATTACTTGCTACACAAGAAATCAACTCATCTTATATCACTAAAGATTTCTTTGTCAACATCAAACAAAAGAACCTCAACATTACTTTCACTCCATCTCCTCGAATTCACAAAGCTTATGCTTTTGTAAATGGAATTGAAACATTCTCAGTGCCCAATAACTTATTCTCTCATGCTTCAAATTCTAATGTTTCTGTTCCTTACCTTGGACACAAAGAACCAATTTTTATCAACAATGAATATGCTTTTGAGAAGCTTTACATGGTTAACATAGGAACTGAATCTTACTATCAAGTTGAAAATGCATTTGGGTCATGGCTAGATGATATCAACTACATTTCTGGTTCACAGTATGGAACTACTCTTATTCTGAAAGAGAATATGATTAATATGAATGCAAGTTTTCTCAATTCAAATGACTATAACTATTCAGCACCACTCGAGTTATACTTGACTGCAAGGACAATGGGAAGCAATGGAGATTCAAACACCAGGTACAATTTAACATGGTCATTTTTTGTTGATTCGGGATTCAAATACCTTGTTAGACTTCATTTCTGCGAGATATCTACGTCGGTAGTAGATGTGAATCAGAGGGTTTTTAGTGTTTATATAAACAACCAAACAGCTGAGGAAAATTTGGATTTAGTTGCTTTGTCTGGCGAACCTTTAAGTCCTTTGTATAGAGACTATGTTGTAATGGTTAATTTGGAAAGTGAGAGAAGGAAAGTTTTCATGTTGATCTCACTTCATCCCAATTTGGAGTCAAGGCCAAAGTATCATGATGCTATATTGAATGGAGTTGAGATTATCAAGTTAAGTGATGGTAACAATAGTCTTGATGCAAGTTTCCAATTGAAGAATGGACTTCAAAAGGAGAAGAAATTTCCAATTTTTGTTGTTGTTGTTGGTACTAGTACTTTCAGTATCATTTTGGTACTTTTCATAACATTTTTCATTGTTAGAAGAAAAGCATGGACAAAAATAAAAATTGGAATTTTTCATGTACTTAAATTGAATTCCACTTCAAGAAGTGAAGAAATGATTCAAGTAAAAGTGATATCAGGTAATTGTTATCAATTCACTTTAGAAGAGATCACTTCAGCAACAAATGATTTCAATGAAGATCTTGTGATTGGGGAAGGAGGTTTTGGAAAGGTATACAAAGGAAACATCATGCTTGATGGAGTAGTGATTGATGTGGCGATAAAGCGCGCTAAGCGGAGTTCGCGACAAGGCTTTAAGGAATTTCAAAATGAGATCAATTTTCATTCATTTTATCATATGAATTTAGTGTCACTGTTGGGATACTGTCAAGAGAGTAATGAATTGATACTTGTGTATGAATACATGGCTGAAGGTTCACTTTGTGATCATTTATACAAGAAACAGAAGCAACCTTTATCATGGAATCAAAGAATGGAGATTTGTGTTGGTGCAGCTAGAGGAATCCATTACCTTCATACAGGTAGAACGACTGCGGTGATTCATCGCGATATTAAGTCGGCGAACATATTATTGGATCAGTATTTGGTACCAAAGGTTTCAGATTTTGGATTGTCTAGAGTGGTTCCTTCAATTTACCACACTCATGTTAGTACTGAGCTTAAAGGTACTTTTGGATATTTGGATCCTGAGTACTACAAAAGAAGAAAATTGACTGAAAAATCAGATGTTTATGCATTTGGGGTGGTTTTGTTTGAAGTGTTGAGTGGAAGAGCAGCAGTGAATCCTGAGGCAGTGGAAGAGGAAAATGAGAAAGTTGGTTTGGTAGAATGGGCTATGCATTGTCACCAATGTGGAACTATTGATAGATTGGTTGATTCATATTTAGAAGGAAAAATAAGGTTGGTATGCTTAATGGCATTTGTGGAGATTGGCATTCAGTGCATTGCTAAGAAGAGTGCAGAAAGGCCAACTATGGGAGAGGTTCTCAGTAGTTTAGAGAAAATTATGTCCTCGCCGGAACATTTGGAGAGGCAGGAAATCCAAACTGTTGATATGAGTTCATAG 2460 0.3553 MKKTHIIDSSRFVIIFLVPQLFFYFFIHLTSCDKILLNCGSSGSSTFNGLNWIGDIETSFLQTSYDTTSSTTLLLSNTNKVAPEVPYSTARIVHHSPLTYSIPFSSPGLKFIRLYFLSTSYLPTYTSNSNSNSFFSVKSGPYTLVDNFNPLLATQEINSSYITKDFFVNIKQKNLNITFTPSPRIHKAYAFVNGIETFSVPNNLFSHASNSNVSVPYLGHKEPIFINNEYAFEKLYMVNIGTESYYQVENAFGSWLDDINYISGSQYGTTLILKENMINMNASFLNSNDYNYSAPLELYLTARTMGSNGDSNTRYNLTWSFFVDSGFKYLVRLHFCEISTSVVDVNQRVFSVYINNQTAEENLDLVALSGEPLSPLYRDYVVMVNLESERRKVFMLISLHPNLESRPKYHDAILNGVEIIKLSDGNNSLDASFQLKNGLQKEKKFPIFVVVVGTSTFSIILVLFITFFIVRRKAWTKIKIGIFHVLKLNSTSRSEEMIQVKVISGNCYQFTLEEITSATNDFNEDLVIGEGGFGKVYKGNIMLDGVVIDVAIKRAKRSSRQGFKEFQNEINFHSFYHMNLVSLLGYCQESNELILVYEYMAEGSLCDHLYKKQKQPLSWNQRMEICVGAARGIHYLHTGRTTAVIHRDIKSANILLDQYLVPKVSDFGLSRVVPSIYHTHVSTELKGTFGYLDPEYYKRRKLTEKSDVYAFGVVLFEVLSGRAAVNPEAVEEENEKVGLVEWAMHCHQCGTIDRLVDSYLEGKIRLVCLMAFVEIGIQCIAKKSAERPTMGEVLSSLEKIMSSPEHLERQEIQTVDMSS 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08974 819 FunFam FERONIA receptor-like kinase 34 201 - -
Vifa1g08974 819 Pfam Protein tyrosine and serine/threonine kinase 527 796 IPR001245 GO:0004672|GO:0006468
Vifa1g08974 819 SUPERFAMILY Protein kinase-like (PK-like) 494 797 IPR011009 -
Vifa1g08974 819 CDD STKc_IRAK 528 800 - -
Vifa1g08974 819 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672|GO:0006468
Vifa1g08974 819 PANTHER OS03G0124300 PROTEIN-RELATED 28 473 IPR046957 GO:0004672
Vifa1g08974 819 Gene3D - 35 200 - -
Vifa1g08974 819 Gene3D - 231 423 - -
Vifa1g08974 819 Gene3D Phosphorylase Kinase; domain 1 484 599 - -
Vifa1g08974 819 FunFam receptor-like protein kinase FERONIA 486 599 - -
Vifa1g08974 819 ProSiteProfiles Protein kinase domain profile. 522 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08974 819 Gene3D Transferase(Phosphotransferase) domain 1 600 818 - -
Vifa1g08974 819 ProSitePatterns Protein kinases ATP-binding region signature. 528 553 IPR017441 GO:0005524
Vifa1g08974 819 FunFam FERONIA receptor-like kinase 230 423 - -
Vifa1g08974 819 Pfam Malectin-like domain 37 421 IPR024788 -
Vifa1g08974 819 SMART serkin_6 522 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08974 819 FunFam Receptor-like protein kinase FERONIA 600 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08974 Vifa-Chr1 1422547198 1422549657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08974 33 808 Receptor kinase-like Gene Family AT3G51550 41.995 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vifa1g08974 Malectin_like 1.7e-26 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08974 - - tpra:123911550 1194.87