Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08958 ATGGGTAGAGGAAAGGTAGAATTAAAGAGGATTGAGAATAAAATAAATCGTCAAGTAACATTTGCAAAGAGAAGAAATGGGTTGCTGAAGAAGGCCTATGAACTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTTATTATTTTCTCTAACCGTGGAAAGCTCTATGAATTCTGCAGTGGCACAAGCATGGCGAAGACCCTTGAACGGTACCAAAGATGCAGCTATGGAGCCTTGGAAATACATCACCAATCTGAAATTGAGACACAGAAGCGCTATCAGGAGTATCTCAAGCTAAAATCAAAAGTCGAGGGACTCCAGCAAATACAAAGAAACTTTCTTGGAGAACAATTGGAGCAGTTAGATATTAAGGAGCTTGATCAGCTAGAACGTCAGTTAGACTCTTCCTTAAAAACAATCAGGTCGAACAAGACACAGCATATGCTTGATCAACTCACAGATTTGCAAAGAAAGGAAGAGATGCTACTGGAAACTAATAATGTGCTCAGGAACAAGTTGGAGGAAATTAATGTGAACCTTCAACAAACATGGGAATCTAGGGAGCAAAATGGCCCCTATAGCTGCCCCCCTCACCAATCAGAGGGGTTCTATGAGAAAGCACGTTGCAATAGTACATTGCAAATTGGCTATGATTCTTCAATGTTAAATAATGAATCAGGAGGAGCTGCAGGAACCTCATCTCAGAATGCTAATGGCTTCATGCATGGATGGATGAACTGA 738 0.4092 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGTSMAKTLERYQRCSYGALEIHHQSEIETQKRYQEYLKLKSKVEGLQQIQRNFLGEQLEQLDIKELDQLERQLDSSLKTIRSNKTQHMLDQLTDLQRKEEMLLETNNVLRNKLEEINVNLQQTWESREQNGPYSCPPHQSEGFYEKARCNSTLQIGYDSSMLNNESGGAAGTSSQNANGFMHGWMN 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08958 245 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Vifa1g08958 245 Coils Coil 125 145 - -
Vifa1g08958 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa1g08958 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa1g08958 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa1g08958 245 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Vifa1g08958 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vifa1g08958 245 Pfam K-box region 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa1g08958 245 FunFam MADS-box transcription factor 1 13 96 - -
Vifa1g08958 245 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vifa1g08958 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vifa1g08958 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa1g08958 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa1g08958 245 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa1g08958 245 Coils Coil 151 174 - -
Vifa1g08958 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08958 Vifa-Chr1 1420681697 1420700136 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08958 1 244 MADS-box Gene Family AT5G15800 57.471 4.86e-94 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa1g08958 K-box 4.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08958 K09264 - gmx:100811049 409.838