Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08956 ATGGGAAGAAGTAAGGTACAGCTAAAACGGATCGAGAACAAGATCAATCGACAGGTTACTTTCTCAAAAAGAAGAACTGGTTTGCTCAAGAAAGCTAATGAGATCTCAGTTCTTTGTGATGCTGAAGTTGCTTTGATTGTTTTTTCTCATAATGGAAAACTCTTTGAGTATTCAACTGATTCATGCATGGAGCAGATACTAGAACGCCATGAAAGATATGGCTATGCAGAGAAACTACTTGTAGCAAATGATGCTACTGAGGAAAACTGGACAGTTGAATACACTAGGCTCAAGGCAAAAATTGATCTTTTGGAGAGAAACCATAGGCACTACATGGGAGAAGGTCTAGCTACAATGAGCCTGAAAGAGCTTCAATGTCTAGAACAGCAGTTAGATACTGGTCTCAAGAACATCCGTACCCGAAGAACTCAAATCATGTATGAGGCCATTTCTGAACTTCAGAAAAAGGAGAGAGGGATACAAGAGCAGAATAACATGCTCTCAAAAGAGATAAAGGAGAAAGAAAAGGCGGTTGCGGAGGAGGCCGCGGCGGCCGCTGCTGCTGCTCAATGGGAGCAGCCAAACTACAGAGTTGATAATACATCTTTCTTTCAACATCACCCTCTTGCTGGTTTAAACATGAGTGGCAACTACCGTGAGGGAGATCCAGAACTCATGAGGAACGGACTTGACCTCACTCTTGAACCACTATATTATTAA 720 0.4222 MGRSKVQLKRIENKINRQVTFSKRRTGLLKKANEISVLCDAEVALIVFSHNGKLFEYSTDSCMEQILERHERYGYAEKLLVANDATEENWTVEYTRLKAKIDLLERNHRHYMGEGLATMSLKELQCLEQQLDTGLKNIRTRRTQIMYEAISELQKKERGIQEQNNMLSKEIKEKEKAVAEEAAAAAAAAQWEQPNYRVDNTSFFQHHPLAGLNMSGNYREGDPELMRNGLDLTLEPLYY 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08956 239 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Vifa1g08956 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa1g08956 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa1g08956 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa1g08956 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Vifa1g08956 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vifa1g08956 239 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa1g08956 239 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Vifa1g08956 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa1g08956 239 Coils Coil 87 107 - -
Vifa1g08956 239 Coils Coil 150 184 - -
Vifa1g08956 239 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Vifa1g08956 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa1g08956 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vifa1g08956 239 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa1g08956 239 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08956 Vifa-Chr1 1420385402 1420391206 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08956 1 238 MADS-box Gene Family AT1G26310 60.079 6.90e-98 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa1g08956 K-box 2.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08956 K09264 - gmx:100819745 328.946